miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28124 5' -56.4 NC_005887.1 + 2956 0.66 0.54483
Target:  5'- gGCgGCCGAcguguCCGUCGUCgccuGCGCg- -3'
miRNA:   3'- aCGaCGGCUugu--GGCAGCAG----UGCGag -5'
28124 5' -56.4 NC_005887.1 + 13498 0.66 0.577718
Target:  5'- gUGCUGagCGGuGCGCCGcUCGUCGCaGCa- -3'
miRNA:   3'- -ACGACg-GCU-UGUGGC-AGCAGUG-CGag -5'
28124 5' -56.4 NC_005887.1 + 34005 0.76 0.149992
Target:  5'- gUGCUcGCCGAGCGCCGUCGgCAgGUc- -3'
miRNA:   3'- -ACGA-CGGCUUGUGGCAGCaGUgCGag -5'
28124 5' -56.4 NC_005887.1 + 7123 0.72 0.26389
Target:  5'- cGCUGCaccgGAAUGCCGUCGaaggucaUCACGCg- -3'
miRNA:   3'- aCGACGg---CUUGUGGCAGC-------AGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 28489 0.68 0.470853
Target:  5'- cGCgaGCaCGAGCGCCuG-CG-CGCGCUCg -3'
miRNA:   3'- aCGa-CG-GCUUGUGG-CaGCaGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 1301 0.66 0.577718
Target:  5'- cGCgUGCUGAGCGCCG-CGcaGCGCcCg -3'
miRNA:   3'- aCG-ACGGCUUGUGGCaGCagUGCGaG- -5'
28124 5' -56.4 NC_005887.1 + 42042 0.71 0.31615
Target:  5'- gUGCUGCUGAuaggcgagcGCGCCG-CG-CACGCa- -3'
miRNA:   3'- -ACGACGGCU---------UGUGGCaGCaGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 29415 0.66 0.588784
Target:  5'- gGCUGCCGggUucuCCG-CGUaC-CGCUa -3'
miRNA:   3'- aCGACGGCuuGu--GGCaGCA-GuGCGAg -5'
28124 5' -56.4 NC_005887.1 + 11940 0.66 0.593222
Target:  5'- cGCUGCCGAACgacgaaagaccGCCGagCGUCGaaaacgauccgcccgUGCUg -3'
miRNA:   3'- aCGACGGCUUG-----------UGGCa-GCAGU---------------GCGAg -5'
28124 5' -56.4 NC_005887.1 + 26011 0.68 0.434833
Target:  5'- cGuCUGCCGGGcCACCGUCuacaaucugGugcgcgacggcaagcUCACGCUCg -3'
miRNA:   3'- aC-GACGGCUU-GUGGCAG---------C---------------AGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 9076 0.76 0.141821
Target:  5'- gGCUGCagaGAAaa-CGUCGUCGCGCUUg -3'
miRNA:   3'- aCGACGg--CUUgugGCAGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 38240 0.66 0.54483
Target:  5'- gGCcaUGCUGcACACCGcCuauuUCGCGCUCg -3'
miRNA:   3'- aCG--ACGGCuUGUGGCaGc---AGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 40304 0.69 0.402324
Target:  5'- -aUUGCCGAA-GCCGUCGcucggCACGCUg -3'
miRNA:   3'- acGACGGCUUgUGGCAGCa----GUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 1541 0.72 0.251148
Target:  5'- aGC-GCCGcACGCCGUCGgcgUCGgGCUCc -3'
miRNA:   3'- aCGaCGGCuUGUGGCAGC---AGUgCGAG- -5'
28124 5' -56.4 NC_005887.1 + 21925 0.73 0.214223
Target:  5'- aGCUGCUGuGCGCCaGUCGUCAaCGUg- -3'
miRNA:   3'- aCGACGGCuUGUGG-CAGCAGU-GCGag -5'
28124 5' -56.4 NC_005887.1 + 31012 0.66 0.566698
Target:  5'- cGCgggcGCCGAcauCACCGcCGagCGCGCUg -3'
miRNA:   3'- aCGa---CGGCUu--GUGGCaGCa-GUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 40991 0.66 0.566698
Target:  5'- cGUUGCCGAAC-UCGgugCG-CGCGCg- -3'
miRNA:   3'- aCGACGGCUUGuGGCa--GCaGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 39785 0.69 0.411726
Target:  5'- cGCUcgcGCCGAucguuGCGCgCGUCGUCAC-UUCg -3'
miRNA:   3'- aCGA---CGGCU-----UGUG-GCAGCAGUGcGAG- -5'
28124 5' -56.4 NC_005887.1 + 29391 0.67 0.533998
Target:  5'- gGCccaUGCCG-GCGCgGUCGcgaUCAgGCUCg -3'
miRNA:   3'- aCG---ACGGCuUGUGgCAGC---AGUgCGAG- -5'
28124 5' -56.4 NC_005887.1 + 29768 0.67 0.523242
Target:  5'- aGCUGaucgCGAGgauCGCCG-CGUCGCGCa- -3'
miRNA:   3'- aCGACg---GCUU---GUGGCaGCAGUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.