miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28127 5' -63.4 NC_005887.1 + 21815 0.66 0.225816
Target:  5'- -cCGCgGCGCuGC-CgGGCGCGC-CGAAu -3'
miRNA:   3'- aaGCGgCGCG-CGuG-CCGCGCGuGCUU- -5'
28127 5' -63.4 NC_005887.1 + 6811 0.66 0.225816
Target:  5'- -aCGCUGCGCGacUGGCGCuacgugGCGCGGGu -3'
miRNA:   3'- aaGCGGCGCGCguGCCGCG------CGUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 19427 0.66 0.237733
Target:  5'- aUCGUCGC-CGCACGcGUcuGCuGCGCGAGc -3'
miRNA:   3'- aAGCGGCGcGCGUGC-CG--CG-CGUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 10220 0.66 0.243887
Target:  5'- -aUGCC-CGCGCcggACGGCGCGUcUGAu -3'
miRNA:   3'- aaGCGGcGCGCG---UGCCGCGCGuGCUu -5'
28127 5' -63.4 NC_005887.1 + 29180 0.66 0.243887
Target:  5'- cUUGCUGCGCugcgaggaucuGCGCGGCcuuaaGCuGCGCGAu -3'
miRNA:   3'- aAGCGGCGCG-----------CGUGCCG-----CG-CGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 29643 0.66 0.231115
Target:  5'- cUCGCCGuCGUcacucacGCGCGGCGCgagguaGCACa-- -3'
miRNA:   3'- aAGCGGC-GCG-------CGUGCCGCG------CGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 15053 0.66 0.250172
Target:  5'- -aCGCCuGCGgccUGCGCGGCcUGCGCGGc -3'
miRNA:   3'- aaGCGG-CGC---GCGUGCCGcGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 17500 0.66 0.250172
Target:  5'- --gGCCGUGCaugaugGCACGGaaauGCGCACGc- -3'
miRNA:   3'- aagCGGCGCG------CGUGCCg---CGCGUGCuu -5'
28127 5' -63.4 NC_005887.1 + 16472 0.66 0.22005
Target:  5'- cUCGaCCGCGCgGCAggaucCGGCGgGCugGu- -3'
miRNA:   3'- aAGC-GGCGCG-CGU-----GCCGCgCGugCuu -5'
28127 5' -63.4 NC_005887.1 + 27016 0.66 0.22005
Target:  5'- cUUCG-UGUGCGCAaccuCGGCgaGCGCGCGAc -3'
miRNA:   3'- -AAGCgGCGCGCGU----GCCG--CGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 41639 0.66 0.250172
Target:  5'- -cUGCUGCGUcuGCGCGGCGCaCGCu-- -3'
miRNA:   3'- aaGCGGCGCG--CGUGCCGCGcGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 35888 0.66 0.250172
Target:  5'- -aCGCCGCGCccGUACuucaGGuCGCGCACu-- -3'
miRNA:   3'- aaGCGGCGCG--CGUG----CC-GCGCGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 15623 0.66 0.250172
Target:  5'- aUCGa-GCGCGguCGcGCGCGC-CGAGu -3'
miRNA:   3'- aAGCggCGCGCguGC-CGCGCGuGCUU- -5'
28127 5' -63.4 NC_005887.1 + 29782 0.66 0.225816
Target:  5'- aUCGCCGCGuCGCGCagcucgGGCcaguaGCugGAAg -3'
miRNA:   3'- aAGCGGCGC-GCGUG------CCGcg---CGugCUU- -5'
28127 5' -63.4 NC_005887.1 + 28288 0.66 0.235913
Target:  5'- -aCGCCgaGCGCGCGCaGCGUcguggcgacuuguuGCugGAAg -3'
miRNA:   3'- aaGCGG--CGCGCGUGcCGCG--------------CGugCUU- -5'
28127 5' -63.4 NC_005887.1 + 18636 0.66 0.243887
Target:  5'- -aCGCCGCGacgaGCAUGuCGCcCGCGAAg -3'
miRNA:   3'- aaGCGGCGCg---CGUGCcGCGcGUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 28478 0.66 0.237733
Target:  5'- -gCGCCuGCGCGCgcucggcugcgACGuGCGCGUgACGAc -3'
miRNA:   3'- aaGCGG-CGCGCG-----------UGC-CGCGCG-UGCUu -5'
28127 5' -63.4 NC_005887.1 + 42178 0.66 0.21948
Target:  5'- aUUGCgaauuCGCGCGCGCuGGCucgucgcauugcuGCGCGCGGu -3'
miRNA:   3'- aAGCG-----GCGCGCGUG-CCG-------------CGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 10089 0.66 0.243887
Target:  5'- -cCGUCGUGUGgGCGGCccGCGC-CGAc -3'
miRNA:   3'- aaGCGGCGCGCgUGCCG--CGCGuGCUu -5'
28127 5' -63.4 NC_005887.1 + 1074 0.66 0.237733
Target:  5'- --aGCCG-GUGUACaGcGCGCGCACGGc -3'
miRNA:   3'- aagCGGCgCGCGUG-C-CGCGCGUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.