miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28127 5' -63.4 NC_005887.1 + 28210 0.71 0.096888
Target:  5'- -gCGCCGCGCGUcucggcgguuuugaGCaGCGCGCGCa-- -3'
miRNA:   3'- aaGCGGCGCGCG--------------UGcCGCGCGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 28572 0.72 0.078036
Target:  5'- gUCGCCGCccGCuGCGCGGaCGCGguCGAc -3'
miRNA:   3'- aAGCGGCG--CG-CGUGCC-GCGCguGCUu -5'
28127 5' -63.4 NC_005887.1 + 42022 0.72 0.078036
Target:  5'- gUCGCCGCgGCGCGCGaUGCGUACa-- -3'
miRNA:   3'- aAGCGGCG-CGCGUGCcGCGCGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 3399 0.72 0.08164
Target:  5'- gUUCGCCGCGCGCuaccgcuggcaggGCGGCuuugucacgcagauGgGCGCGAc -3'
miRNA:   3'- -AAGCGGCGCGCG-------------UGCCG--------------CgCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 32672 0.72 0.084923
Target:  5'- gUCGCgCGUGCGCGCuucGGCaaccgcguacaGCGCACGGAu -3'
miRNA:   3'- aAGCG-GCGCGCGUG---CCG-----------CGCGUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 40758 0.72 0.084923
Target:  5'- aUCGCCGUugGCGCGCcGCGCGCcgcCGAGc -3'
miRNA:   3'- aAGCGGCG--CGCGUGcCGCGCGu--GCUU- -5'
28127 5' -63.4 NC_005887.1 + 633 0.71 0.092128
Target:  5'- --aGCCGCgaugaaaGCGCGCGGCgaGCGCACGc- -3'
miRNA:   3'- aagCGGCG-------CGCGUGCCG--CGCGUGCuu -5'
28127 5' -63.4 NC_005887.1 + 5963 0.71 0.092386
Target:  5'- cUCGCUgGCGCGUcCGGCGaugcaGCACGAu -3'
miRNA:   3'- aAGCGG-CGCGCGuGCCGCg----CGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 16128 0.71 0.093427
Target:  5'- -gCGCCGCGCGCAacCaccccgccaaccaccGGCGCGC-CGAGu -3'
miRNA:   3'- aaGCGGCGCGCGU--G---------------CCGCGCGuGCUU- -5'
28127 5' -63.4 NC_005887.1 + 18021 0.73 0.075862
Target:  5'- -cCGCCGCGCGCuuacGCGCGC-CGGAc -3'
miRNA:   3'- aaGCGGCGCGCGugc-CGCGCGuGCUU- -5'
28127 5' -63.4 NC_005887.1 + 1480 0.73 0.073746
Target:  5'- -aCGCCGacgGCGUGCGGCGCucGCGCGGc -3'
miRNA:   3'- aaGCGGCg--CGCGUGCCGCG--CGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 40161 0.73 0.071686
Target:  5'- cUCGCCGCGUGUgaGCuGCGCgacgGCACGAAg -3'
miRNA:   3'- aAGCGGCGCGCG--UGcCGCG----CGUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 31502 0.89 0.003693
Target:  5'- aUUGCCGCGCGCGCGGCGCGgAUGAAc -3'
miRNA:   3'- aAGCGGCGCGCGUGCCGCGCgUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 30767 0.8 0.020773
Target:  5'- cUCGaCCGUGCGCGCGGCgaguuccuucuGCGCGCGAu -3'
miRNA:   3'- aAGC-GGCGCGCGUGCCG-----------CGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 14383 0.78 0.029438
Target:  5'- gUCGCCGCucgGCGCGC-GCGCGUACGAc -3'
miRNA:   3'- aAGCGGCG---CGCGUGcCGCGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 32750 0.77 0.035021
Target:  5'- cUCGCgUGCGCGC-CGGCGCGCGCc-- -3'
miRNA:   3'- aAGCG-GCGCGCGuGCCGCGCGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 34710 0.76 0.04164
Target:  5'- gUCGUCGCGCuuGCGGUGCGCgGCGAu -3'
miRNA:   3'- aAGCGGCGCGcgUGCCGCGCG-UGCUu -5'
28127 5' -63.4 NC_005887.1 + 27345 0.75 0.045394
Target:  5'- -gCGCCaCGCGCAgCGGCGCGCagACGAGc -3'
miRNA:   3'- aaGCGGcGCGCGU-GCCGCGCG--UGCUU- -5'
28127 5' -63.4 NC_005887.1 + 13609 0.75 0.045394
Target:  5'- aUCGCUGCugGCaGCGCGGCGCGCgGCGGc -3'
miRNA:   3'- aAGCGGCG--CG-CGUGCCGCGCG-UGCUu -5'
28127 5' -63.4 NC_005887.1 + 41959 0.74 0.060444
Target:  5'- cUCGCguggUGCGUGCGCGGCGCGCuCGc- -3'
miRNA:   3'- aAGCG----GCGCGCGUGCCGCGCGuGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.