Results 1 - 20 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28127 | 5' | -63.4 | NC_005887.1 | + | 542 | 0.69 | 0.132466 |
Target: 5'- -cCGCCGCGCGC-C-GCGCcggauacaGCGCGAAg -3' miRNA: 3'- aaGCGGCGCGCGuGcCGCG--------CGUGCUU- -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 616 | 0.68 | 0.169045 |
Target: 5'- gUCuUCGCGCuguauccgGCGCGGCGCGCgGCGGc -3' miRNA: 3'- aAGcGGCGCG--------CGUGCCGCGCG-UGCUu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 633 | 0.71 | 0.092128 |
Target: 5'- --aGCCGCgaugaaaGCGCGCGGCgaGCGCACGc- -3' miRNA: 3'- aagCGGCG-------CGCGUGCCG--CGCGUGCuu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 1006 | 0.68 | 0.17832 |
Target: 5'- -cCGCCGUGCGCGCgcuguacaccGGCuugaaGCGgACGAAg -3' miRNA: 3'- aaGCGGCGCGCGUG----------CCG-----CGCgUGCUU- -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 1074 | 0.66 | 0.237733 |
Target: 5'- --aGCCG-GUGUACaGcGCGCGCACGGc -3' miRNA: 3'- aagCGGCgCGCGUG-C-CGCGCGUGCUu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 1480 | 0.73 | 0.073746 |
Target: 5'- -aCGCCGacgGCGUGCGGCGCucGCGCGGc -3' miRNA: 3'- aaGCGGCg--CGCGUGCCGCG--CGUGCUu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 1555 | 0.72 | 0.078036 |
Target: 5'- --gGCCGCGcCGCGCGaGCGCcGCACGc- -3' miRNA: 3'- aagCGGCGC-GCGUGC-CGCG-CGUGCuu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 2246 | 0.7 | 0.115437 |
Target: 5'- gUCGUCGCGacgaGCAUGG-GCGCGCGu- -3' miRNA: 3'- aAGCGGCGCg---CGUGCCgCGCGUGCuu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 2449 | 0.7 | 0.112286 |
Target: 5'- cUCGCUGCGC-UACGGCGcCGUcgACGAGg -3' miRNA: 3'- aAGCGGCGCGcGUGCCGC-GCG--UGCUU- -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 2517 | 0.68 | 0.178319 |
Target: 5'- cUCGUCGacgGCGC-CGuaGCGCGCGAGg -3' miRNA: 3'- aAGCGGCg--CGCGuGCcgCGCGUGCUU- -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 3309 | 0.72 | 0.089832 |
Target: 5'- -gCGCaGCGCGaGCGGCGCGguCGAAu -3' miRNA: 3'- aaGCGgCGCGCgUGCCGCGCguGCUU- -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 3399 | 0.72 | 0.08164 |
Target: 5'- gUUCGCCGCGCGCuaccgcuggcaggGCGGCuuugucacgcagauGgGCGCGAc -3' miRNA: 3'- -AAGCGGCGCGCG-------------UGCCG--------------CgCGUGCUu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 4471 | 0.75 | 0.045394 |
Target: 5'- aUCGCCGCGCcuucGC-CGGCGCGCAUu-- -3' miRNA: 3'- aAGCGGCGCG----CGuGCCGCGCGUGcuu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 4477 | 0.69 | 0.139906 |
Target: 5'- -cUGCCGCGaagguGCcgaACGGCGCGCGCa-- -3' miRNA: 3'- aaGCGGCGCg----CG---UGCCGCGCGUGcuu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 4620 | 0.69 | 0.147726 |
Target: 5'- cUCGCCGCgGCGC-CGGUGgccgccgGCGCGAu -3' miRNA: 3'- aAGCGGCG-CGCGuGCCGCg------CGUGCUu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 4734 | 0.67 | 0.21441 |
Target: 5'- cUCGCCGUcuGCGCAgCGGUcUGCGCGu- -3' miRNA: 3'- aAGCGGCG--CGCGU-GCCGcGCGUGCuu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 5234 | 0.7 | 0.125393 |
Target: 5'- cUCGaCGCGUGCcaucagcaucaGCGGCGCGC-CGAc -3' miRNA: 3'- aAGCgGCGCGCG-----------UGCCGCGCGuGCUu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 5351 | 0.69 | 0.151374 |
Target: 5'- cUUCGCCGCGCGCugcuCGGgcgacUGCGUuucagguGCGAGc -3' miRNA: 3'- -AAGCGGCGCGCGu---GCC-----GCGCG-------UGCUU- -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 5963 | 0.71 | 0.092386 |
Target: 5'- cUCGCUgGCGCGUcCGGCGaugcaGCACGAu -3' miRNA: 3'- aAGCGG-CGCGCGuGCCGCg----CGUGCUu -5' |
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28127 | 5' | -63.4 | NC_005887.1 | + | 6811 | 0.66 | 0.225816 |
Target: 5'- -aCGCUGCGCGacUGGCGCuacgugGCGCGGGu -3' miRNA: 3'- aaGCGGCGCGCguGCCGCG------CGUGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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