miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28127 5' -63.4 NC_005887.1 + 11721 1.03 0.000278
Target:  5'- cUUCGCCGCGCGCACGGCGCGCACGAAu -3'
miRNA:   3'- -AAGCGGCGCGCGUGCCGCGCGUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 31502 0.89 0.003693
Target:  5'- aUUGCCGCGCGCGCGGCGCGgAUGAAc -3'
miRNA:   3'- aAGCGGCGCGCGUGCCGCGCgUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 30767 0.8 0.020773
Target:  5'- cUCGaCCGUGCGCGCGGCgaguuccuucuGCGCGCGAu -3'
miRNA:   3'- aAGC-GGCGCGCGUGCCG-----------CGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 27723 0.78 0.027779
Target:  5'- --aGCCGCGCGCGCGGCagcucagcGCGCACa-- -3'
miRNA:   3'- aagCGGCGCGCGUGCCG--------CGCGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 30828 0.78 0.029183
Target:  5'- cUCGCCGCGCGCACGGUcgagcugaccgacgGCGaaguCGCGAAg -3'
miRNA:   3'- aAGCGGCGCGCGUGCCG--------------CGC----GUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 14383 0.78 0.029438
Target:  5'- gUCGCCGCucgGCGCGC-GCGCGUACGAc -3'
miRNA:   3'- aAGCGGCG---CGCGUGcCGCGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 32750 0.77 0.035021
Target:  5'- cUCGCgUGCGCGC-CGGCGCGCGCc-- -3'
miRNA:   3'- aAGCG-GCGCGCGuGCCGCGCGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 32816 0.77 0.035021
Target:  5'- -aUGgCGCGCGC-CGGCGCGCACGc- -3'
miRNA:   3'- aaGCgGCGCGCGuGCCGCGCGUGCuu -5'
28127 5' -63.4 NC_005887.1 + 11781 0.76 0.037104
Target:  5'- -gCGCCGUGCGCGCGGCGaa-GCGAu -3'
miRNA:   3'- aaGCGGCGCGCGUGCCGCgcgUGCUu -5'
28127 5' -63.4 NC_005887.1 + 28349 0.76 0.040457
Target:  5'- -aCGCUGCGCGCGCucGGCGUGC-CGAu -3'
miRNA:   3'- aaGCGGCGCGCGUG--CCGCGCGuGCUu -5'
28127 5' -63.4 NC_005887.1 + 34710 0.76 0.04164
Target:  5'- gUCGUCGCGCuuGCGGUGCGCgGCGAu -3'
miRNA:   3'- aAGCGGCGCGcgUGCCGCGCG-UGCUu -5'
28127 5' -63.4 NC_005887.1 + 4471 0.75 0.045394
Target:  5'- aUCGCCGCGCcuucGC-CGGCGCGCAUu-- -3'
miRNA:   3'- aAGCGGCGCG----CGuGCCGCGCGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 27345 0.75 0.045394
Target:  5'- -gCGCCaCGCGCAgCGGCGCGCagACGAGc -3'
miRNA:   3'- aaGCGGcGCGCGU-GCCGCGCG--UGCUU- -5'
28127 5' -63.4 NC_005887.1 + 13609 0.75 0.045394
Target:  5'- aUCGCUGCugGCaGCGCGGCGCGCgGCGGc -3'
miRNA:   3'- aAGCGGCG--CG-CGUGCCGCGCG-UGCUu -5'
28127 5' -63.4 NC_005887.1 + 40840 0.74 0.055482
Target:  5'- cUCGaCCGCcggcucggcgGCGCGCGGCGCGCcaacgGCGAu -3'
miRNA:   3'- aAGC-GGCG----------CGCGUGCCGCGCG-----UGCUu -5'
28127 5' -63.4 NC_005887.1 + 31561 0.74 0.057091
Target:  5'- -gCGCCGCGCGCGCGGCaaucgGUGacUACGAAc -3'
miRNA:   3'- aaGCGGCGCGCGUGCCG-----CGC--GUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 15013 0.74 0.057091
Target:  5'- gUUGCgGCGCGUcguACGGCaGCGCGCGGc -3'
miRNA:   3'- aAGCGgCGCGCG---UGCCG-CGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 41959 0.74 0.060444
Target:  5'- cUCGCguggUGCGUGCGCGGCGCGCuCGc- -3'
miRNA:   3'- aAGCG----GCGCGCGUGCCGCGCGuGCuu -5'
28127 5' -63.4 NC_005887.1 + 11613 0.73 0.067732
Target:  5'- -cCGCCGCGCGCu--GCGCGC-CGAGc -3'
miRNA:   3'- aaGCGGCGCGCGugcCGCGCGuGCUU- -5'
28127 5' -63.4 NC_005887.1 + 25020 0.73 0.071686
Target:  5'- --gGCCGCGCGCaagGCGGCccGCGCGCa-- -3'
miRNA:   3'- aagCGGCGCGCG---UGCCG--CGCGUGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.