miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28128 5' -60.6 NC_005887.1 + 26056 0.66 0.381454
Target:  5'- uGGCAugGuggugcuccuggucaGCGCgucaGCGGCcCGCGCGGc -3'
miRNA:   3'- -CCGUugC---------------UGUGg---CGCCGcGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 27572 0.66 0.377968
Target:  5'- cGCAGCGgaaguACAgCGCGaGCGCGcCGuCGAg -3'
miRNA:   3'- cCGUUGC-----UGUgGCGC-CGCGC-GC-GCUa -5'
28128 5' -60.6 NC_005887.1 + 13725 0.66 0.392932
Target:  5'- cGGCAagccgaacaucgucGCGAUGCCGUacGGCuG-GCGCGAg -3'
miRNA:   3'- -CCGU--------------UGCUGUGGCG--CCG-CgCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 9284 0.66 0.386724
Target:  5'- cGGCAcgGCGACGCCGCaGGUuaCGgGCa-- -3'
miRNA:   3'- -CCGU--UGCUGUGGCG-CCGc-GCgCGcua -5'
28128 5' -60.6 NC_005887.1 + 41640 0.66 0.386724
Target:  5'- uGCuGCGuCugCGCGGCGCaCGCu-- -3'
miRNA:   3'- cCGuUGCuGugGCGCCGCGcGCGcua -5'
28128 5' -60.6 NC_005887.1 + 12868 0.66 0.385843
Target:  5'- aGGC-ACGA--CCGUGGCaggugccGUGCGCGAg -3'
miRNA:   3'- -CCGuUGCUguGGCGCCG-------CGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 17158 0.66 0.386724
Target:  5'- cGGCGaagaucGCGAgG-CGUGGgaGCGCGCGAa -3'
miRNA:   3'- -CCGU------UGCUgUgGCGCCg-CGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 34359 0.66 0.366787
Target:  5'- cGGCuggaGACGAgCGCCccgcguaucagaguGCGGcCGgGCGCGAg -3'
miRNA:   3'- -CCG----UUGCU-GUGG--------------CGCC-GCgCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 39776 0.66 0.386724
Target:  5'- uGGUcGCGGCGCuCGCGccgaucguuGCGCGCGUc-- -3'
miRNA:   3'- -CCGuUGCUGUG-GCGC---------CGCGCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 41597 0.66 0.352512
Target:  5'- aGCGGCGGC-CCagguGCGGCGgccgGCGCGGc -3'
miRNA:   3'- cCGUUGCUGuGG----CGCCGCg---CGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 23648 0.66 0.372779
Target:  5'- aGGCuguACG-CGCUGaUugucggagauaauccGGCGCGCGCGAa -3'
miRNA:   3'- -CCGu--UGCuGUGGC-G---------------CCGCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 14530 0.66 0.360861
Target:  5'- aGGC-GCGGCcguCgGCGGCGCGU-CGAUc -3'
miRNA:   3'- -CCGuUGCUGu--GgCGCCGCGCGcGCUA- -5'
28128 5' -60.6 NC_005887.1 + 8485 0.66 0.360861
Target:  5'- cGGCGACGACA-CGUGGCucgaguCGCGUa-- -3'
miRNA:   3'- -CCGUUGCUGUgGCGCCGc-----GCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 21263 0.66 0.369347
Target:  5'- -uCGGgGGCACCGCGGCgGCG-GCGu- -3'
miRNA:   3'- ccGUUgCUGUGGCGCCG-CGCgCGCua -5'
28128 5' -60.6 NC_005887.1 + 16117 0.66 0.377968
Target:  5'- -cCggUGGCGCUGCGcCGCGCGCa-- -3'
miRNA:   3'- ccGuuGCUGUGGCGCcGCGCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 24879 0.66 0.369347
Target:  5'- aGGCGGCGGCcgaUGCcGCGCGCuCGGUc -3'
miRNA:   3'- -CCGUUGCUGug-GCGcCGCGCGcGCUA- -5'
28128 5' -60.6 NC_005887.1 + 16516 0.66 0.394718
Target:  5'- aGGCcgaucGCGuCGCCGcCGGCGCcgaguggGCGCGu- -3'
miRNA:   3'- -CCGu----UGCuGUGGC-GCCGCG-------CGCGCua -5'
28128 5' -60.6 NC_005887.1 + 14204 0.66 0.341865
Target:  5'- gGGCGcggccucggacaggGCGGCGCCGCGcUGUucgGCGCGGc -3'
miRNA:   3'- -CCGU--------------UGCUGUGGCGCcGCG---CGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 14704 0.66 0.377968
Target:  5'- cGCGGCGGgcggGCCG-GGCGCG-GCGAUc -3'
miRNA:   3'- cCGUUGCUg---UGGCgCCGCGCgCGCUA- -5'
28128 5' -60.6 NC_005887.1 + 16426 0.66 0.395612
Target:  5'- aGGCcgagauCGACgggaucgagaACCGC-GUGCGCGCGGg -3'
miRNA:   3'- -CCGuu----GCUG----------UGGCGcCGCGCGCGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.