miRNA display CGI


Results 1 - 20 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28128 5' -60.6 NC_005887.1 + 34696 0.72 0.155523
Target:  5'- aGCAGCGggcggccgucgucGCGCuUGCGGUGCGCgGCGAUg -3'
miRNA:   3'- cCGUUGC-------------UGUG-GCGCCGCGCG-CGCUA- -5'
28128 5' -60.6 NC_005887.1 + 18552 0.73 0.121989
Target:  5'- gGGCGGCGGCGCCgGCuuCGCGgGCGAc -3'
miRNA:   3'- -CCGUUGCUGUGG-CGccGCGCgCGCUa -5'
28128 5' -60.6 NC_005887.1 + 14369 0.73 0.132466
Target:  5'- gGGCAccuguuCGAguCGCCGCucGGCGCGCGCGc- -3'
miRNA:   3'- -CCGUu-----GCU--GUGGCG--CCGCGCGCGCua -5'
28128 5' -60.6 NC_005887.1 + 4399 0.72 0.136139
Target:  5'- aGGCAAUGcGCGCCGgcgaaGGCGCG-GCGAUc -3'
miRNA:   3'- -CCGUUGC-UGUGGCg----CCGCGCgCGCUA- -5'
28128 5' -60.6 NC_005887.1 + 42000 0.72 0.138766
Target:  5'- cGGCcuGCGGCccacgucgagugucGCCGCGGCGCGCGa--- -3'
miRNA:   3'- -CCGu-UGCUG--------------UGGCGCCGCGCGCgcua -5'
28128 5' -60.6 NC_005887.1 + 1487 0.72 0.139906
Target:  5'- cGGCGuGCGGCGCucgCGCGGCGCggccGUGCGGa -3'
miRNA:   3'- -CCGU-UGCUGUG---GCGCCGCG----CGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 40634 0.72 0.143767
Target:  5'- cGGCAAgacaGGCACUGaCGaGCGCGCGcCGAUc -3'
miRNA:   3'- -CCGUUg---CUGUGGC-GC-CGCGCGC-GCUA- -5'
28128 5' -60.6 NC_005887.1 + 1135 0.72 0.147726
Target:  5'- --uGACGAaGCCGCGcGUGCGCGUGAa -3'
miRNA:   3'- ccgUUGCUgUGGCGC-CGCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 4182 0.72 0.150557
Target:  5'- aGCGGCGACaugACCGCGaccgaagugcugcaGCGCGCGCa-- -3'
miRNA:   3'- cCGUUGCUG---UGGCGC--------------CGCGCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 23356 0.73 0.121989
Target:  5'- -aCAACG-CACCGCGGCGCuCGCaGAUg -3'
miRNA:   3'- ccGUUGCuGUGGCGCCGCGcGCG-CUA- -5'
28128 5' -60.6 NC_005887.1 + 13611 0.73 0.115437
Target:  5'- cGCuGCuGGCAgCGCGGCGCGCgGCGGc -3'
miRNA:   3'- cCGuUG-CUGUgGCGCCGCGCG-CGCUa -5'
28128 5' -60.6 NC_005887.1 + 4609 0.73 0.115437
Target:  5'- uGCAACaGAugcuCGCCGCGGCGCcgguggccgccgGCGCGAUc -3'
miRNA:   3'- cCGUUG-CU----GUGGCGCCGCG------------CGCGCUA- -5'
28128 5' -60.6 NC_005887.1 + 298 0.83 0.021387
Target:  5'- uGGCGugaucaGCGAgGCCGCGGUGCGCGCGu- -3'
miRNA:   3'- -CCGU------UGCUgUGGCGCCGCGCGCGCua -5'
28128 5' -60.6 NC_005887.1 + 15549 0.8 0.03819
Target:  5'- gGGCGACGACu---CGGCGCGCGCGAc -3'
miRNA:   3'- -CCGUUGCUGuggcGCCGCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 5412 0.76 0.073746
Target:  5'- cGGCgGGCGGCGCCGCaGCGaccgGCGCGAc -3'
miRNA:   3'- -CCG-UUGCUGUGGCGcCGCg---CGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 21798 0.76 0.08027
Target:  5'- cGGCAucaacACGACGuCCGCGGCGCugccggGCGCGc- -3'
miRNA:   3'- -CCGU-----UGCUGU-GGCGCCGCG------CGCGCua -5'
28128 5' -60.6 NC_005887.1 + 15380 0.75 0.084923
Target:  5'- aGCAGguCGACGCCGCGcugauCGCGCGCGGg -3'
miRNA:   3'- cCGUU--GCUGUGGCGCc----GCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 41266 0.75 0.094744
Target:  5'- cGGCAAUGGCGCCGUcgaccugcgcacgGGCGCGCuGCu-- -3'
miRNA:   3'- -CCGUUGCUGUGGCG-------------CCGCGCG-CGcua -5'
28128 5' -60.6 NC_005887.1 + 32458 0.74 0.106223
Target:  5'- cGCAGCcACugCGCGGCGUGCG-GAUc -3'
miRNA:   3'- cCGUUGcUGugGCGCCGCGCGCgCUA- -5'
28128 5' -60.6 NC_005887.1 + 7124 0.74 0.112285
Target:  5'- aGGCGggGCGGCGCUGCGGCGC-CGUu-- -3'
miRNA:   3'- -CCGU--UGCUGUGGCGCCGCGcGCGcua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.