miRNA display CGI


Results 1 - 20 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28128 5' -60.6 NC_005887.1 + 298 0.83 0.021387
Target:  5'- uGGCGugaucaGCGAgGCCGCGGUGCGCGCGu- -3'
miRNA:   3'- -CCGU------UGCUgUGGCGCCGCGCGCGCua -5'
28128 5' -60.6 NC_005887.1 + 483 0.7 0.21441
Target:  5'- aGCAACagcgGGCGgCGCGGCGCGUcuucGCGGc -3'
miRNA:   3'- cCGUUG----CUGUgGCGCCGCGCG----CGCUa -5'
28128 5' -60.6 NC_005887.1 + 625 0.68 0.279423
Target:  5'- uGGcCGGCGGucuucgcgcuguaucCGgCGCGGCGCGCgGCGGc -3'
miRNA:   3'- -CC-GUUGCU---------------GUgGCGCCGCGCG-CGCUa -5'
28128 5' -60.6 NC_005887.1 + 1135 0.72 0.147726
Target:  5'- --uGACGAaGCCGCGcGUGCGCGUGAa -3'
miRNA:   3'- ccgUUGCUgUGGCGC-CGCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 1230 0.69 0.23171
Target:  5'- uGGCgGGCG-CugCGCGGCGCucagcaCGCGAa -3'
miRNA:   3'- -CCG-UUGCuGugGCGCCGCGc-----GCGCUa -5'
28128 5' -60.6 NC_005887.1 + 1487 0.72 0.139906
Target:  5'- cGGCGuGCGGCGCucgCGCGGCGCggccGUGCGGa -3'
miRNA:   3'- -CCGU-UGCUGUG---GCGCCGCG----CGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 1573 0.66 0.377968
Target:  5'- cGGguACGuguuccGCACgGCcGCGcCGCGCGAg -3'
miRNA:   3'- -CCguUGC------UGUGgCGcCGC-GCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 2167 0.69 0.246385
Target:  5'- cGGCAugGACuucggccugacgccgGCCGCGGUGaucgggcaGCGCa-- -3'
miRNA:   3'- -CCGUugCUG---------------UGGCGCCGCg-------CGCGcua -5'
28128 5' -60.6 NC_005887.1 + 2456 0.67 0.297953
Target:  5'- cGCuACGGCGCCGUcgacgaGGCGCuGaCGCGGa -3'
miRNA:   3'- cCGuUGCUGUGGCG------CCGCG-C-GCGCUa -5'
28128 5' -60.6 NC_005887.1 + 2515 0.71 0.160205
Target:  5'- cGuCGACGGCGCCGUaGCGCGCGaGGUg -3'
miRNA:   3'- cC-GUUGCUGUGGCGcCGCGCGCgCUA- -5'
28128 5' -60.6 NC_005887.1 + 2662 0.67 0.297223
Target:  5'- gGGCGcggGCGagcacaaGCACC-UGGUGCGCGUGAa -3'
miRNA:   3'- -CCGU---UGC-------UGUGGcGCCGCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 2890 0.69 0.23171
Target:  5'- aGGCGACGACGgacaCGuCGGcCGC-CGCGAa -3'
miRNA:   3'- -CCGUUGCUGUg---GC-GCC-GCGcGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 2935 0.67 0.328294
Target:  5'- aGCuGCGcaaGCGCCGCGGCacCGcCGCGAc -3'
miRNA:   3'- cCGuUGC---UGUGGCGCCGc-GC-GCGCUa -5'
28128 5' -60.6 NC_005887.1 + 2975 0.69 0.237733
Target:  5'- uGGCGGCGGCGucguUCGCGGCG-GC-CGAc -3'
miRNA:   3'- -CCGUUGCUGU----GGCGCCGCgCGcGCUa -5'
28128 5' -60.6 NC_005887.1 + 3004 0.76 0.08027
Target:  5'- cGCGGCGGUGCCGCGGCGCuuGCGCa-- -3'
miRNA:   3'- cCGUUGCUGUGGCGCCGCG--CGCGcua -5'
28128 5' -60.6 NC_005887.1 + 3322 0.71 0.169045
Target:  5'- cGGCGACGAagUugCGCaGCGCgagcgGCGCGGUc -3'
miRNA:   3'- -CCGUUGCU--GugGCGcCGCG-----CGCGCUA- -5'
28128 5' -60.6 NC_005887.1 + 3458 0.67 0.3205
Target:  5'- cGGUAGCG-CGCgGCGaacaGCGUGCGCa-- -3'
miRNA:   3'- -CCGUUGCuGUGgCGC----CGCGCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 3699 0.66 0.395612
Target:  5'- uGGaCGGCGACagguuuucacgGCCGaaGCGCuGCGCGGc -3'
miRNA:   3'- -CC-GUUGCUG-----------UGGCgcCGCG-CGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 3929 0.68 0.263143
Target:  5'- uGGCGAaGACcaacauCCGCGGCGCGCa---- -3'
miRNA:   3'- -CCGUUgCUGu-----GGCGCCGCGCGcgcua -5'
28128 5' -60.6 NC_005887.1 + 4182 0.72 0.150557
Target:  5'- aGCGGCGACaugACCGCGaccgaagugcugcaGCGCGCGCa-- -3'
miRNA:   3'- cCGUUGCUG---UGGCGC--------------CGCGCGCGcua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.