miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28128 5' -60.6 NC_005887.1 + 12418 1.06 0.000341
Target:  5'- gGGCAACGACACCGCGGCGCGCGCGAUc -3'
miRNA:   3'- -CCGUUGCUGUGGCGCCGCGCGCGCUA- -5'
28128 5' -60.6 NC_005887.1 + 298 0.83 0.021387
Target:  5'- uGGCGugaucaGCGAgGCCGCGGUGCGCGCGu- -3'
miRNA:   3'- -CCGU------UGCUgUGGCGCCGCGCGCGCua -5'
28128 5' -60.6 NC_005887.1 + 28622 0.8 0.036997
Target:  5'- gGGCGGCGACGCCuacaaauucagcaGCccGGCGCGCGUGAg -3'
miRNA:   3'- -CCGUUGCUGUGG-------------CG--CCGCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 15549 0.8 0.03819
Target:  5'- gGGCGACGACu---CGGCGCGCGCGAc -3'
miRNA:   3'- -CCGUUGCUGuggcGCCGCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 14963 0.77 0.06754
Target:  5'- uGCAGCGGCACCGUagcagcuGGCGCauucugccGCGCGGUg -3'
miRNA:   3'- cCGUUGCUGUGGCG-------CCGCG--------CGCGCUA- -5'
28128 5' -60.6 NC_005887.1 + 5412 0.76 0.073746
Target:  5'- cGGCgGGCGGCGCCGCaGCGaccgGCGCGAc -3'
miRNA:   3'- -CCG-UUGCUGUGGCGcCGCg---CGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 30872 0.76 0.073746
Target:  5'- uGGC--CGAgGCCGCGGUGCGCGCc-- -3'
miRNA:   3'- -CCGuuGCUgUGGCGCCGCGCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 36139 0.76 0.075862
Target:  5'- uGCAGCuGuACAUCGaCGGCGUGCGCGAg -3'
miRNA:   3'- cCGUUG-C-UGUGGC-GCCGCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 4685 0.76 0.076725
Target:  5'- cGGCGGCcaccGGCGCCGCGGCGagcaucuguugcaucUGCGCGGc -3'
miRNA:   3'- -CCGUUG----CUGUGGCGCCGC---------------GCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 31587 0.76 0.08027
Target:  5'- uGGCGaaGCGACAacugcguucauCCGCGccGCGCGCGCGGc -3'
miRNA:   3'- -CCGU--UGCUGU-----------GGCGC--CGCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 3004 0.76 0.08027
Target:  5'- cGCGGCGGUGCCGCGGCGCuuGCGCa-- -3'
miRNA:   3'- cCGUUGCUGUGGCGCCGCG--CGCGcua -5'
28128 5' -60.6 NC_005887.1 + 21798 0.76 0.08027
Target:  5'- cGGCAucaacACGACGuCCGCGGCGCugccggGCGCGc- -3'
miRNA:   3'- -CCGU-----UGCUGU-GGCGCCGCG------CGCGCua -5'
28128 5' -60.6 NC_005887.1 + 14084 0.75 0.084684
Target:  5'- cGGCGGCG-CGCCgGCGGUugcggagGCGCGCGGc -3'
miRNA:   3'- -CCGUUGCuGUGG-CGCCG-------CGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 15380 0.75 0.084923
Target:  5'- aGCAGguCGACGCCGCGcugauCGCGCGCGGg -3'
miRNA:   3'- cCGUU--GCUGUGGCGCc----GCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 40831 0.75 0.092386
Target:  5'- cGGCucgGCGGCGC-GCGGCGCGCcaacgGCGAUc -3'
miRNA:   3'- -CCGu--UGCUGUGgCGCCGCGCG-----CGCUA- -5'
28128 5' -60.6 NC_005887.1 + 41266 0.75 0.094744
Target:  5'- cGGCAAUGGCGCCGUcgaccugcgcacgGGCGCGCuGCu-- -3'
miRNA:   3'- -CCGUUGCUGUGGCG-------------CCGCGCG-CGcua -5'
28128 5' -60.6 NC_005887.1 + 35396 0.74 0.097703
Target:  5'- uGGC--CGGcCGCCGCGGCGCGCggcaguggaGCGAUg -3'
miRNA:   3'- -CCGuuGCU-GUGGCGCCGCGCG---------CGCUA- -5'
28128 5' -60.6 NC_005887.1 + 15009 0.74 0.103308
Target:  5'- cGGCGcgucguACGGCAgCgCGCGGCGUGCGuCGAUc -3'
miRNA:   3'- -CCGU------UGCUGU-G-GCGCCGCGCGC-GCUA- -5'
28128 5' -60.6 NC_005887.1 + 32458 0.74 0.106223
Target:  5'- cGCAGCcACugCGCGGCGUGCG-GAUc -3'
miRNA:   3'- cCGUUGcUGugGCGCCGCGCGCgCUA- -5'
28128 5' -60.6 NC_005887.1 + 38361 0.74 0.109215
Target:  5'- cGGCGACGGCACCcugacCGuuGCGUGCGAa -3'
miRNA:   3'- -CCGUUGCUGUGGc----GCcgCGCGCGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.