miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2813 3' -60.6 NC_001491.2 + 115080 0.66 0.742203
Target:  5'- uGCCugCGCCuG-GGCU-CCGCCAggCGCa -3'
miRNA:   3'- -UGGugGUGG-CgCCGAuGGUGGUg-GCG- -5'
2813 3' -60.6 NC_001491.2 + 133880 0.66 0.742203
Target:  5'- aACCACCAUUGCGaCgauCUugUugCGCg -3'
miRNA:   3'- -UGGUGGUGGCGCcGau-GGugGugGCG- -5'
2813 3' -60.6 NC_001491.2 + 4903 0.66 0.742203
Target:  5'- uGCgACCACCaGCGGCUGUCugaCGUCGCg -3'
miRNA:   3'- -UGgUGGUGG-CGCCGAUGGug-GUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 21688 0.66 0.742203
Target:  5'- -gCAUCAUCGCaGUUACUugCgggGCCGCg -3'
miRNA:   3'- ugGUGGUGGCGcCGAUGGugG---UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 95181 0.66 0.742203
Target:  5'- uCCACCAgcugcgcguUUGCGGUUGCguCCAUgGCu -3'
miRNA:   3'- uGGUGGU---------GGCGCCGAUGguGGUGgCG- -5'
2813 3' -60.6 NC_001491.2 + 118539 0.66 0.739376
Target:  5'- cGCaGCCAgCGCGGCcgaagagggguucacCCAgcCCGCCGCg -3'
miRNA:   3'- -UGgUGGUgGCGCCGau-------------GGU--GGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 114624 0.66 0.739376
Target:  5'- aGCCACCG-CGCGGCcaACCgauggggacucgggGCCugGCUGCg -3'
miRNA:   3'- -UGGUGGUgGCGCCGa-UGG--------------UGG--UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 85149 0.66 0.732748
Target:  5'- uCgGCgACCGCGGCUucuaugugcgauGCCGCaguaACgGCg -3'
miRNA:   3'- uGgUGgUGGCGCCGA------------UGGUGg---UGgCG- -5'
2813 3' -60.6 NC_001491.2 + 139792 0.66 0.72321
Target:  5'- -aCGCCGCCgGCGGaCgcagagcGCUACUggGCCGCg -3'
miRNA:   3'- ugGUGGUGG-CGCC-Ga------UGGUGG--UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 21246 0.66 0.72321
Target:  5'- aACCGCCACCGUcgaugcucaGGCUccccccuuACCAacgaaaACCGUu -3'
miRNA:   3'- -UGGUGGUGGCG---------CCGA--------UGGUgg----UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 123046 0.66 0.703923
Target:  5'- cCCACgGagCGCGGCagcgagACCGCgugCGCCGCg -3'
miRNA:   3'- uGGUGgUg-GCGCCGa-----UGGUG---GUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 56517 0.66 0.703923
Target:  5'- aGCCAUgACCGaGGCUAgccgUCGCUcuauACCGCu -3'
miRNA:   3'- -UGGUGgUGGCgCCGAU----GGUGG----UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 114729 0.66 0.69419
Target:  5'- uACCGCCAgCGCGucCUGCCcgacuacgACgGCUGCa -3'
miRNA:   3'- -UGGUGGUgGCGCc-GAUGG--------UGgUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 147387 0.66 0.69419
Target:  5'- gGCCGCCGgcuCCaGgGGCUcggagcGCCGCuUGCCGCu -3'
miRNA:   3'- -UGGUGGU---GG-CgCCGA------UGGUG-GUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 104821 0.66 0.69419
Target:  5'- aGCCcauaguCUACCGCGGUgGCCAUguCCaGCu -3'
miRNA:   3'- -UGGu-----GGUGGCGCCGaUGGUGguGG-CG- -5'
2813 3' -60.6 NC_001491.2 + 97463 0.66 0.69419
Target:  5'- aGCUucCCACgGCGcGCUuaAgCGCCGCCGUu -3'
miRNA:   3'- -UGGu-GGUGgCGC-CGA--UgGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 65747 0.66 0.69419
Target:  5'- -gCGCagaGCCG-GGCgcccguccACCACCAUCGCg -3'
miRNA:   3'- ugGUGg--UGGCgCCGa-------UGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 83853 0.66 0.693214
Target:  5'- --aACCGgUGUGGCUguagucgGCCGCUAUCGCu -3'
miRNA:   3'- uggUGGUgGCGCCGA-------UGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 59914 0.66 0.684409
Target:  5'- -aCACagcuCCGgGGgUACCACUauGCCGCu -3'
miRNA:   3'- ugGUGgu--GGCgCCgAUGGUGG--UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 143149 0.67 0.674587
Target:  5'- aACCcUCACagauGCGGUUACUACaucuaACCGCu -3'
miRNA:   3'- -UGGuGGUGg---CGCCGAUGGUGg----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.