miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 5' -55 NC_005887.1 + 34424 0.65 0.707206
Target:  5'- -aCGCGGG-GCGcucGUcUCCAGccguggccGGCGCCa -3'
miRNA:   3'- ccGCGCCCuUGC---UAaAGGUC--------UCGCGG- -5'
28133 5' -55 NC_005887.1 + 15916 0.65 0.707206
Target:  5'- uGCGCGcGGGCG-UUUCCcucGAucGCGCCg -3'
miRNA:   3'- cCGCGCcCUUGCuAAAGGu--CU--CGCGG- -5'
28133 5' -55 NC_005887.1 + 282 0.65 0.707206
Target:  5'- uGGCGCGGGAACug---CguG-GCGUg -3'
miRNA:   3'- -CCGCGCCCUUGcuaaaGguCuCGCGg -5'
28133 5' -55 NC_005887.1 + 23202 0.65 0.707206
Target:  5'- cGGC-CGGGGGCGGcuacUUCaAGGGCcacGCCg -3'
miRNA:   3'- -CCGcGCCCUUGCUa---AAGgUCUCG---CGG- -5'
28133 5' -55 NC_005887.1 + 13965 0.65 0.707206
Target:  5'- gGGCGCGcGGucACGGUgcaccugacgUUCCcgacgaAGAauGCGCCg -3'
miRNA:   3'- -CCGCGC-CCu-UGCUA----------AAGG------UCU--CGCGG- -5'
28133 5' -55 NC_005887.1 + 14081 0.65 0.707206
Target:  5'- cGGCGCGccGGCGGUUg-CGGAGgCGCg -3'
miRNA:   3'- -CCGCGCccUUGCUAAagGUCUC-GCGg -5'
28133 5' -55 NC_005887.1 + 34397 0.65 0.702848
Target:  5'- gGGCGCGaGGcccggccugcaaucAGucgagcucguccuCGGUUUCCGGAGCggucGCCu -3'
miRNA:   3'- -CCGCGC-CC--------------UU-------------GCUAAAGGUCUCG----CGG- -5'
28133 5' -55 NC_005887.1 + 37706 0.66 0.696291
Target:  5'- cGC-CGGGGGCGAUcaggUUCAGcGCGUa -3'
miRNA:   3'- cCGcGCCCUUGCUAa---AGGUCuCGCGg -5'
28133 5' -55 NC_005887.1 + 16096 0.66 0.696291
Target:  5'- uGGCcgGUGGuGaAACGcUUUCCGGuGGCGCUg -3'
miRNA:   3'- -CCG--CGCC-C-UUGCuAAAGGUC-UCGCGG- -5'
28133 5' -55 NC_005887.1 + 14701 0.66 0.685312
Target:  5'- cGuCGCGGcGGGCGGg--CCGG-GCGCg -3'
miRNA:   3'- cC-GCGCC-CUUGCUaaaGGUCuCGCGg -5'
28133 5' -55 NC_005887.1 + 30865 0.66 0.685312
Target:  5'- uGCGCuGGuccUGAUg-CCAGAGCGCg -3'
miRNA:   3'- cCGCGcCCuu-GCUAaaGGUCUCGCGg -5'
28133 5' -55 NC_005887.1 + 41551 0.66 0.674281
Target:  5'- cGGCGCGcacGCGAag-UCAGccAGCGCCg -3'
miRNA:   3'- -CCGCGCccuUGCUaaaGGUC--UCGCGG- -5'
28133 5' -55 NC_005887.1 + 8407 0.66 0.674281
Target:  5'- aGGCGCGuGGGcCGAgcacgaCCAGGcuauCGCCg -3'
miRNA:   3'- -CCGCGC-CCUuGCUaaa---GGUCUc---GCGG- -5'
28133 5' -55 NC_005887.1 + 17172 0.66 0.668749
Target:  5'- aGGCGUGGGAGCGcgcgaacgcggCCGcacgcggcaauguuGCGCCg -3'
miRNA:   3'- -CCGCGCCCUUGCuaaa-------GGUcu------------CGCGG- -5'
28133 5' -55 NC_005887.1 + 3297 0.67 0.640987
Target:  5'- cGGCGCGGucGAAuCGAacaucUUCUGcGAGCGCUc -3'
miRNA:   3'- -CCGCGCC--CUU-GCUa----AAGGU-CUCGCGG- -5'
28133 5' -55 NC_005887.1 + 40972 0.67 0.629858
Target:  5'- cGGCGCGGGccUGAUguacgugCCcGAGCucgaaGCCu -3'
miRNA:   3'- -CCGCGCCCuuGCUAaa-----GGuCUCG-----CGG- -5'
28133 5' -55 NC_005887.1 + 35126 0.67 0.618732
Target:  5'- gGGCGCGGau-CGGaaUCC--GGCGCCa -3'
miRNA:   3'- -CCGCGCCcuuGCUaaAGGucUCGCGG- -5'
28133 5' -55 NC_005887.1 + 26961 0.67 0.612062
Target:  5'- gGGCGCagcuucucggcauuuGaGGAACGcuggUUCCAGucGGUGCCc -3'
miRNA:   3'- -CCGCG---------------C-CCUUGCua--AAGGUC--UCGCGG- -5'
28133 5' -55 NC_005887.1 + 4773 0.67 0.607618
Target:  5'- aGCGCGGGAAgcUGAcg-CCAGccGGCgagGCCg -3'
miRNA:   3'- cCGCGCCCUU--GCUaaaGGUC--UCG---CGG- -5'
28133 5' -55 NC_005887.1 + 13182 0.67 0.596525
Target:  5'- --aGCGGGAGCGGUcgagCAGGcCGCCg -3'
miRNA:   3'- ccgCGCCCUUGCUAaag-GUCUcGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.