miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 5' -61.9 NC_005887.1 + 40132 0.66 0.326627
Target:  5'- aCAGCgUGCGGUgcgcGCUGCGCGccgcgcucgccgcguGUGAGCu -3'
miRNA:   3'- cGUCG-GCGUCA----CGACGCGC---------------CGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 30866 0.66 0.323508
Target:  5'- -aGGCCGCGGUGC-GCGCcauugaucGCGcGCa -3'
miRNA:   3'- cgUCGGCGUCACGaCGCGc-------CGCuCGc -5'
28135 5' -61.9 NC_005887.1 + 18913 0.66 0.323508
Target:  5'- gGCAGcCCGCAGcGCUcaccgaaucucGCaGCGGCcgucGGCGg -3'
miRNA:   3'- -CGUC-GGCGUCaCGA-----------CG-CGCCGc---UCGC- -5'
28135 5' -61.9 NC_005887.1 + 42144 0.66 0.323508
Target:  5'- cGCAuUCGCAGaGCaGCGgGGCGAacuGCGa -3'
miRNA:   3'- -CGUcGGCGUCaCGaCGCgCCGCU---CGC- -5'
28135 5' -61.9 NC_005887.1 + 28569 0.66 0.315809
Target:  5'- gGCGucGCCGCcc-GCUGCGCGGac-GCGg -3'
miRNA:   3'- -CGU--CGGCGucaCGACGCGCCgcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 3781 0.66 0.315809
Target:  5'- cGCGGaUCGCGGUcgGC-GCGCGGCucgacGGCGu -3'
miRNA:   3'- -CGUC-GGCGUCA--CGaCGCGCCGc----UCGC- -5'
28135 5' -61.9 NC_005887.1 + 14083 0.66 0.315809
Target:  5'- gGCGGCgCGCcGgcgGUUGCGgaGGCGcGCGg -3'
miRNA:   3'- -CGUCG-GCGuCa--CGACGCg-CCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 40750 0.66 0.315809
Target:  5'- cCAGCCGUgcgcgcgcgccaGGUGCaggaugGUGCGGCcGGUGa -3'
miRNA:   3'- cGUCGGCG------------UCACGa-----CGCGCCGcUCGC- -5'
28135 5' -61.9 NC_005887.1 + 5085 0.66 0.315809
Target:  5'- -uGGCUuCGGU-CUGCGCcucGGCGGGCGu -3'
miRNA:   3'- cgUCGGcGUCAcGACGCG---CCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 32824 0.66 0.30825
Target:  5'- cCGGCUGCAuGgcgcGCgccgGCGCGcacGCGAGCGc -3'
miRNA:   3'- cGUCGGCGU-Ca---CGa---CGCGC---CGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 36151 0.66 0.294269
Target:  5'- -uGGCCGCcuacGUGCagcuguacaucgacgGCGUGcGCGAGCGc -3'
miRNA:   3'- cgUCGGCGu---CACGa--------------CGCGC-CGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 840 0.66 0.293547
Target:  5'- cGCGGCCGCgaagaaagccaaGGUGCccguggacGCGUGGCccGCGc -3'
miRNA:   3'- -CGUCGGCG------------UCACGa-------CGCGCCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 13715 0.66 0.293547
Target:  5'- cGCGuucuGCaCGuCGGUGCUGCuCGGCuGAGUGc -3'
miRNA:   3'- -CGU----CG-GC-GUCACGACGcGCCG-CUCGC- -5'
28135 5' -61.9 NC_005887.1 + 8629 0.66 0.293547
Target:  5'- --uGCUGCGGUGCUGCcuuCGGCauGCGc -3'
miRNA:   3'- cguCGGCGUCACGACGc--GCCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 42005 0.66 0.293547
Target:  5'- uGCGGCCcacGUcgAGUGUcGcCGCGGCGcGCGa -3'
miRNA:   3'- -CGUCGG---CG--UCACGaC-GCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 2189 0.66 0.289244
Target:  5'- cCGGCCGCGGUGaucggGCagcgcaaaccgauggGCGGCuGGCGc -3'
miRNA:   3'- cGUCGGCGUCACga---CG---------------CGCCGcUCGC- -5'
28135 5' -61.9 NC_005887.1 + 15679 0.66 0.286403
Target:  5'- cCGGCCGCc-UGCUGCGCGacgccCGuGCGc -3'
miRNA:   3'- cGUCGGCGucACGACGCGCc----GCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 31856 0.66 0.286403
Target:  5'- uGCGGCgGCAGaccacugGCU-CGCagGGUGGGCGa -3'
miRNA:   3'- -CGUCGgCGUCa------CGAcGCG--CCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 351 0.67 0.279397
Target:  5'- --cGUCGCA-UG-UGCGCGGUGAGCu -3'
miRNA:   3'- cguCGGCGUcACgACGCGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 41962 0.67 0.279397
Target:  5'- ----gCGUGGUGCgUGCGCGGCGcGCu -3'
miRNA:   3'- cgucgGCGUCACG-ACGCGCCGCuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.