Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28136 | 3' | -49.7 | NC_005887.1 | + | 31414 | 0.65 | 0.938198 |
Target: 5'- cUGGACGuggGCCaUCGacgacggcccgguCGGCACGUGGg -3' miRNA: 3'- cACUUGUuaaUGG-AGC-------------GCUGUGCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 31301 | 0.66 | 0.933209 |
Target: 5'- -aGAACGGUgGCauguucgaUCGCGucgugcugaaGCACGCGGc -3' miRNA: 3'- caCUUGUUAaUGg-------AGCGC----------UGUGCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 8527 | 0.66 | 0.921237 |
Target: 5'- -cGAGCGGUUgcGCCgggcgcucgaUCGCGuugACGCGGa -3' miRNA: 3'- caCUUGUUAA--UGG----------AGCGCug-UGCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 41161 | 0.66 | 0.921237 |
Target: 5'- -cGucuGCAGUuccucUGCCUCGUccacgaGCGCGCGGa -3' miRNA: 3'- caCu--UGUUA-----AUGGAGCGc-----UGUGCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 13595 | 0.66 | 0.935457 |
Target: 5'- -aGGcCGcgUACUUcaucgcugcuggcagCGCGGCGCGCGGc -3' miRNA: 3'- caCUuGUuaAUGGA---------------GCGCUGUGCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 15378 | 0.66 | 0.933209 |
Target: 5'- -cGAGCAGgucgacGCCgCGCugaucGCGCGCGGg -3' miRNA: 3'- caCUUGUUaa----UGGaGCGc----UGUGCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 23932 | 0.66 | 0.914794 |
Target: 5'- -cGAugAcgUcgGCCUCGCGGCgucuGCGCa- -3' miRNA: 3'- caCUugUuaA--UGGAGCGCUG----UGCGcc -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 3089 | 0.66 | 0.921237 |
Target: 5'- -cGAGCAuggcuUUGCC-CGCGGCGC-UGGc -3' miRNA: 3'- caCUUGUu----AAUGGaGCGCUGUGcGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 15469 | 0.67 | 0.908048 |
Target: 5'- cGUcGACGAUccgcUGCCcgcgCGCGAUcaGCGCGGc -3' miRNA: 3'- -CAcUUGUUA----AUGGa---GCGCUG--UGCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 15061 | 0.67 | 0.908048 |
Target: 5'- -cGGGCGGcacgccugcgGCCUgCGCGGCcuGCGCGGc -3' miRNA: 3'- caCUUGUUaa--------UGGA-GCGCUG--UGCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 40845 | 0.67 | 0.908048 |
Target: 5'- -cGAACcucgACCgccggcUCgGCGGCGCGCGGc -3' miRNA: 3'- caCUUGuuaaUGG------AG-CGCUGUGCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 611 | 0.67 | 0.901001 |
Target: 5'- -cGcGCug-UAUCcggCGCGGCGCGCGGc -3' miRNA: 3'- caCuUGuuaAUGGa--GCGCUGUGCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 7555 | 0.67 | 0.878101 |
Target: 5'- -cGAuCAGgauccgGCCUCGUGGCAgGCGu -3' miRNA: 3'- caCUuGUUaa----UGGAGCGCUGUgCGCc -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 34444 | 0.67 | 0.886023 |
Target: 5'- -gGAGCGGUcGCCUCGaagucgucuuCGuuCGCGCGGc -3' miRNA: 3'- caCUUGUUAaUGGAGC----------GCu-GUGCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 529 | 0.67 | 0.908048 |
Target: 5'- cUGAACGcgUcgGCCgccgCGCGcCGCGcCGGa -3' miRNA: 3'- cACUUGUuaA--UGGa---GCGCuGUGC-GCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 27021 | 0.67 | 0.908048 |
Target: 5'- uGUGcGCA---ACCUCgGCGAgCGCGCGa -3' miRNA: 3'- -CACuUGUuaaUGGAG-CGCU-GUGCGCc -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 36836 | 0.67 | 0.901001 |
Target: 5'- --cAGCAGUUcgacaGCCuugcgcuggaUCGCGACGCGCGc -3' miRNA: 3'- cacUUGUUAA-----UGG----------AGCGCUGUGCGCc -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 14687 | 0.67 | 0.893658 |
Target: 5'- -cGcACGAUcggGCUcgUCGCGGCGgGCGGg -3' miRNA: 3'- caCuUGUUAa--UGG--AGCGCUGUgCGCC- -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 39875 | 0.67 | 0.893658 |
Target: 5'- cUGAGC----GCCUCGCGcauCACGUGa -3' miRNA: 3'- cACUUGuuaaUGGAGCGCu--GUGCGCc -5' |
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28136 | 3' | -49.7 | NC_005887.1 | + | 31499 | 0.67 | 0.886023 |
Target: 5'- ----cCGAUUGCCgcgCGCGcgGCGCGGa -3' miRNA: 3'- cacuuGUUAAUGGa--GCGCugUGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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