miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28136 3' -49.7 NC_005887.1 + 15321 1.13 0.00173
Target:  5'- cGUGAACAAUUACCUCGCGACACGCGGg -3'
miRNA:   3'- -CACUUGUUAAUGGAGCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 1444 0.77 0.381486
Target:  5'- aUGAACGAg-----CGCGACGCGCGGg -3'
miRNA:   3'- cACUUGUUaauggaGCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 16516 0.76 0.420039
Target:  5'- -cGAGCGcaUGCC-CGCGcGCACGCGGu -3'
miRNA:   3'- caCUUGUuaAUGGaGCGC-UGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 17850 0.76 0.440179
Target:  5'- -gGGGCAccgacaACCUCGCGACgACGUGGg -3'
miRNA:   3'- caCUUGUuaa---UGGAGCGCUG-UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 37101 0.75 0.482038
Target:  5'- -cGAGCAca-GCCUCgGCGAuCGCGCGGc -3'
miRNA:   3'- caCUUGUuaaUGGAG-CGCU-GUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 4852 0.74 0.525731
Target:  5'- -cGAGCAcg-GCCUCGcCGGCugGCGu -3'
miRNA:   3'- caCUUGUuaaUGGAGC-GCUGugCGCc -5'
28136 3' -49.7 NC_005887.1 + 29984 0.73 0.593752
Target:  5'- cGUGcGCGAg-GCC-CGCGGCAUGUGGg -3'
miRNA:   3'- -CACuUGUUaaUGGaGCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 40511 0.72 0.616813
Target:  5'- cGUGuucGGCAuccACCaCGCGGCGCGCGGc -3'
miRNA:   3'- -CAC---UUGUuaaUGGaGCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 33033 0.72 0.639932
Target:  5'- -aGAGCAGUUucgcGCCgCGCGAgaacguauuCGCGCGGu -3'
miRNA:   3'- caCUUGUUAA----UGGaGCGCU---------GUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 32745 0.72 0.651486
Target:  5'- cUGuacGCGGUUGCCgaagCGCGcACGCGCGa -3'
miRNA:   3'- cACu--UGUUAAUGGa---GCGC-UGUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 35407 0.72 0.651486
Target:  5'- cGUGaAGCucgugGCCggccgcCGCGGCGCGCGGc -3'
miRNA:   3'- -CAC-UUGuuaa-UGGa-----GCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 34463 0.72 0.659562
Target:  5'- cUGAuuGCAGgccggGCCUCGCGcccggccgccucugAUACGCGGg -3'
miRNA:   3'- cACU--UGUUaa---UGGAGCGC--------------UGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 41422 0.72 0.66302
Target:  5'- -cGAACGcUUcCCg-GCGGCGCGCGGa -3'
miRNA:   3'- caCUUGUuAAuGGagCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 30997 0.71 0.68598
Target:  5'- -gGggUGcgUcUCUCGCGugGCGCGGc -3'
miRNA:   3'- caCuuGUuaAuGGAGCGCugUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 8392 0.71 0.697381
Target:  5'- ---cGCGAaUGCCUCGCGAaacaGCGCGu -3'
miRNA:   3'- cacuUGUUaAUGGAGCGCUg---UGCGCc -5'
28136 3' -49.7 NC_005887.1 + 21974 0.71 0.697381
Target:  5'- cGUGAACGGUUACaUUCGCG-CuCGuCGGg -3'
miRNA:   3'- -CACUUGUUAAUG-GAGCGCuGuGC-GCC- -5'
28136 3' -49.7 NC_005887.1 + 18308 0.71 0.708712
Target:  5'- -cGAugGCGAUgAUCUCGCGGCACuGgGGg -3'
miRNA:   3'- caCU--UGUUAaUGGAGCGCUGUG-CgCC- -5'
28136 3' -49.7 NC_005887.1 + 4744 0.71 0.719961
Target:  5'- -cGAGCAA-UACCggcggugcuuUUGCGACgaGCGCGGg -3'
miRNA:   3'- caCUUGUUaAUGG----------AGCGCUG--UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 41832 0.7 0.742156
Target:  5'- -aGGGCGAcgACCaCGCGAuCugGCGGc -3'
miRNA:   3'- caCUUGUUaaUGGaGCGCU-GugCGCC- -5'
28136 3' -49.7 NC_005887.1 + 41016 0.7 0.763861
Target:  5'- uGUGGACAGgcgucuaCUgGCGcCGCGCGGu -3'
miRNA:   3'- -CACUUGUUaaug---GAgCGCuGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.