miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28136 3' -49.7 NC_005887.1 + 31499 0.67 0.886023
Target:  5'- ----cCGAUUGCCgcgCGCGcgGCGCGGa -3'
miRNA:   3'- cacuuGUUAAUGGa--GCGCugUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 16823 0.69 0.795266
Target:  5'- cGUGGACAAU--CC-CGCGAUggaGCGCGa -3'
miRNA:   3'- -CACUUGUUAauGGaGCGCUG---UGCGCc -5'
28136 3' -49.7 NC_005887.1 + 26676 0.69 0.795266
Target:  5'- aUGAACAucUGCCguuccaugUCGCGAUacagccgucGCGCGGc -3'
miRNA:   3'- cACUUGUuaAUGG--------AGCGCUG---------UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 12417 0.69 0.824982
Target:  5'- -aGGGCAAcgACaC-CGCGGCGCGCGc -3'
miRNA:   3'- caCUUGUUaaUG-GaGCGCUGUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 6797 0.68 0.833518
Target:  5'- -gGGACAucgGCCUcacgcugCGCGACugGCGc -3'
miRNA:   3'- caCUUGUuaaUGGA-------GCGCUGugCGCc -5'
28136 3' -49.7 NC_005887.1 + 4648 0.68 0.843693
Target:  5'- -cGAuCAAggAUCUCaGCGACGCGCa- -3'
miRNA:   3'- caCUuGUUaaUGGAG-CGCUGUGCGcc -5'
28136 3' -49.7 NC_005887.1 + 17097 0.68 0.861425
Target:  5'- ---cGCAA-UACCUCGaCGACGC-CGGg -3'
miRNA:   3'- cacuUGUUaAUGGAGC-GCUGUGcGCC- -5'
28136 3' -49.7 NC_005887.1 + 39760 0.68 0.861425
Target:  5'- aUGAACAAUgagACUcuggUCGCGGCGCucGCGc -3'
miRNA:   3'- cACUUGUUAa--UGG----AGCGCUGUG--CGCc -5'
28136 3' -49.7 NC_005887.1 + 7555 0.67 0.878101
Target:  5'- -cGAuCAGgauccgGCCUCGUGGCAgGCGu -3'
miRNA:   3'- caCUuGUUaa----UGGAGCGCUGUgCGCc -5'
28136 3' -49.7 NC_005887.1 + 20750 0.69 0.794245
Target:  5'- cGUGAcCAAUgcacgcGCCggcaacgUUGCGACACGUGGc -3'
miRNA:   3'- -CACUuGUUAa-----UGG-------AGCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 8191 0.69 0.783929
Target:  5'- -cGGGCAGUucgaugucUACC-CGCGcaccgacACGCGCGGg -3'
miRNA:   3'- caCUUGUUA--------AUGGaGCGC-------UGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 41016 0.7 0.763861
Target:  5'- uGUGGACAGgcgucuaCUgGCGcCGCGCGGu -3'
miRNA:   3'- -CACUUGUUaaug---GAgCGCuGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 17850 0.76 0.440179
Target:  5'- -gGGGCAccgacaACCUCGCGACgACGUGGg -3'
miRNA:   3'- caCUUGUuaa---UGGAGCGCUG-UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 37101 0.75 0.482038
Target:  5'- -cGAGCAca-GCCUCgGCGAuCGCGCGGc -3'
miRNA:   3'- caCUUGUuaaUGGAG-CGCU-GUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 40511 0.72 0.616813
Target:  5'- cGUGuucGGCAuccACCaCGCGGCGCGCGGc -3'
miRNA:   3'- -CAC---UUGUuaaUGGaGCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 30997 0.71 0.68598
Target:  5'- -gGggUGcgUcUCUCGCGugGCGCGGc -3'
miRNA:   3'- caCuuGUuaAuGGAGCGCugUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 21974 0.71 0.697381
Target:  5'- cGUGAACGGUUACaUUCGCG-CuCGuCGGg -3'
miRNA:   3'- -CACUUGUUAAUG-GAGCGCuGuGC-GCC- -5'
28136 3' -49.7 NC_005887.1 + 18308 0.71 0.708712
Target:  5'- -cGAugGCGAUgAUCUCGCGGCACuGgGGg -3'
miRNA:   3'- caCU--UGUUAaUGGAGCGCUGUG-CgCC- -5'
28136 3' -49.7 NC_005887.1 + 4744 0.71 0.719961
Target:  5'- -cGAGCAA-UACCggcggugcuuUUGCGACgaGCGCGGg -3'
miRNA:   3'- caCUUGUUaAUGG----------AGCGCUG--UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 41832 0.7 0.742156
Target:  5'- -aGGGCGAcgACCaCGCGAuCugGCGGc -3'
miRNA:   3'- caCUUGUUaaUGGaGCGCU-GugCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.