miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28136 3' -49.7 NC_005887.1 + 529 0.67 0.908048
Target:  5'- cUGAACGcgUcgGCCgccgCGCGcCGCGcCGGa -3'
miRNA:   3'- cACUUGUuaA--UGGa---GCGCuGUGC-GCC- -5'
28136 3' -49.7 NC_005887.1 + 611 0.67 0.901001
Target:  5'- -cGcGCug-UAUCcggCGCGGCGCGCGGc -3'
miRNA:   3'- caCuUGuuaAUGGa--GCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 1034 0.68 0.843693
Target:  5'- cGUGucgGCGAUcACCUCGUGcuGCACGCc- -3'
miRNA:   3'- -CACu--UGUUAaUGGAGCGC--UGUGCGcc -5'
28136 3' -49.7 NC_005887.1 + 1444 0.77 0.381486
Target:  5'- aUGAACGAg-----CGCGACGCGCGGg -3'
miRNA:   3'- cACUUGUUaauggaGCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 3089 0.66 0.921237
Target:  5'- -cGAGCAuggcuUUGCC-CGCGGCGC-UGGc -3'
miRNA:   3'- caCUUGUu----AAUGGaGCGCUGUGcGCC- -5'
28136 3' -49.7 NC_005887.1 + 4648 0.68 0.843693
Target:  5'- -cGAuCAAggAUCUCaGCGACGCGCa- -3'
miRNA:   3'- caCUuGUUaaUGGAG-CGCUGUGCGcc -5'
28136 3' -49.7 NC_005887.1 + 4744 0.71 0.719961
Target:  5'- -cGAGCAA-UACCggcggugcuuUUGCGACgaGCGCGGg -3'
miRNA:   3'- caCUUGUUaAUGG----------AGCGCUG--UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 4852 0.74 0.525731
Target:  5'- -cGAGCAcg-GCCUCGcCGGCugGCGu -3'
miRNA:   3'- caCUUGUuaaUGGAGC-GCUGugCGCc -5'
28136 3' -49.7 NC_005887.1 + 6797 0.68 0.833518
Target:  5'- -gGGACAucgGCCUcacgcugCGCGACugGCGc -3'
miRNA:   3'- caCUUGUuaaUGGA-------GCGCUGugCGCc -5'
28136 3' -49.7 NC_005887.1 + 7555 0.67 0.878101
Target:  5'- -cGAuCAGgauccgGCCUCGUGGCAgGCGu -3'
miRNA:   3'- caCUuGUUaa----UGGAGCGCUGUgCGCc -5'
28136 3' -49.7 NC_005887.1 + 8180 0.69 0.805376
Target:  5'- -cGAACAGcggcGCCUCgGCGA-GCGCGGc -3'
miRNA:   3'- caCUUGUUaa--UGGAG-CGCUgUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 8191 0.69 0.783929
Target:  5'- -cGGGCAGUucgaugucUACC-CGCGcaccgacACGCGCGGg -3'
miRNA:   3'- caCUUGUUA--------AUGGaGCGC-------UGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 8392 0.71 0.697381
Target:  5'- ---cGCGAaUGCCUCGCGAaacaGCGCGu -3'
miRNA:   3'- cacuUGUUaAUGGAGCGCUg---UGCGCc -5'
28136 3' -49.7 NC_005887.1 + 8527 0.66 0.921237
Target:  5'- -cGAGCGGUUgcGCCgggcgcucgaUCGCGuugACGCGGa -3'
miRNA:   3'- caCUUGUUAA--UGG----------AGCGCug-UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 9928 0.68 0.843693
Target:  5'- -cGAACcg-UACgaugUGCGGCGCGCGGc -3'
miRNA:   3'- caCUUGuuaAUGga--GCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 12417 0.69 0.824982
Target:  5'- -aGGGCAAcgACaC-CGCGGCGCGCGc -3'
miRNA:   3'- caCUUGUUaaUG-GaGCGCUGUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 13595 0.66 0.935457
Target:  5'- -aGGcCGcgUACUUcaucgcugcuggcagCGCGGCGCGCGGc -3'
miRNA:   3'- caCUuGUuaAUGGA---------------GCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 14687 0.67 0.893658
Target:  5'- -cGcACGAUcggGCUcgUCGCGGCGgGCGGg -3'
miRNA:   3'- caCuUGUUAa--UGG--AGCGCUGUgCGCC- -5'
28136 3' -49.7 NC_005887.1 + 15061 0.67 0.908048
Target:  5'- -cGGGCGGcacgccugcgGCCUgCGCGGCcuGCGCGGc -3'
miRNA:   3'- caCUUGUUaa--------UGGA-GCGCUG--UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 15321 1.13 0.00173
Target:  5'- cGUGAACAAUUACCUCGCGACACGCGGg -3'
miRNA:   3'- -CACUUGUUAAUGGAGCGCUGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.