miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 42210 0.72 0.095186
Target:  5'- uUCGCCCCGCUGcUCugCGaauGCGCGCCa -3'
miRNA:   3'- -GGUGGGGCGGUuGGugGC---CGCGCGGc -5'
28138 3' -64 NC_005887.1 + 41670 0.71 0.117721
Target:  5'- -gGCCgCGCCGGCCGCCgcaccugGGC-CGCCGc -3'
miRNA:   3'- ggUGGgGCGGUUGGUGG-------CCGcGCGGC- -5'
28138 3' -64 NC_005887.1 + 41582 0.67 0.237287
Target:  5'- aCguUCCUGUCGGCCAgCGGCG-GCCc -3'
miRNA:   3'- -GguGGGGCGGUUGGUgGCCGCgCGGc -5'
28138 3' -64 NC_005887.1 + 41273 0.7 0.134817
Target:  5'- -gGCgCCGUCGACCugCgcacgGGCGCGCUGc -3'
miRNA:   3'- ggUGgGGCGGUUGGugG-----CCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 40906 0.67 0.243229
Target:  5'- aCGagCCGCCGaagGCUACCGcGCGCGCa- -3'
miRNA:   3'- gGUggGGCGGU---UGGUGGC-CGCGCGgc -5'
28138 3' -64 NC_005887.1 + 40881 0.67 0.237287
Target:  5'- aUCACCUCGUCAucguCgAgCGGCGCGUCn -3'
miRNA:   3'- -GGUGGGGCGGUu---GgUgGCCGCGCGGc -5'
28138 3' -64 NC_005887.1 + 40856 0.7 0.134817
Target:  5'- uCCA-CCgGCgaAGCCGCCGcGCGCGUCGa -3'
miRNA:   3'- -GGUgGGgCGg-UUGGUGGC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 40852 0.75 0.064767
Target:  5'- gCCGCCacgaaccucgaCCGCCGGCUcggcggcGCgCGGCGCGCCa -3'
miRNA:   3'- -GGUGG-----------GGCGGUUGG-------UG-GCCGCGCGGc -5'
28138 3' -64 NC_005887.1 + 40775 0.67 0.220189
Target:  5'- gCGCgCCGCCGA--GCCGGCG-GUCGa -3'
miRNA:   3'- gGUGgGGCGGUUggUGGCCGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 40760 0.7 0.138427
Target:  5'- uCgGCuCCUGCCAGCCgugCGcGCGCGCCa -3'
miRNA:   3'- -GgUG-GGGCGGUUGGug-GC-CGCGCGGc -5'
28138 3' -64 NC_005887.1 + 40740 0.8 0.025908
Target:  5'- gCCGCCCgCGUCGaggcgaucGCCGuuGGCGCGCCGc -3'
miRNA:   3'- -GGUGGG-GCGGU--------UGGUggCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 40654 0.66 0.255484
Target:  5'- -aGCgCgCGCCGAUCACCGGC-CGCa- -3'
miRNA:   3'- ggUGgG-GCGGUUGGUGGCCGcGCGgc -5'
28138 3' -64 NC_005887.1 + 40601 0.68 0.209383
Target:  5'- gCGCCagaCCGUCGucGCUGCC-GCGCGCCGc -3'
miRNA:   3'- gGUGG---GGCGGU--UGGUGGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 40132 0.71 0.119304
Target:  5'- cCCGCCCCGCCGgacgaucggaacgguAUCgggcguagGCCGGC-CGCCu -3'
miRNA:   3'- -GGUGGGGCGGU---------------UGG--------UGGCCGcGCGGc -5'
28138 3' -64 NC_005887.1 + 39784 0.71 0.118036
Target:  5'- gCGCUCgCGCCGAUCGuuGcGCGCGUCGu -3'
miRNA:   3'- gGUGGG-GCGGUUGGUggC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 37686 0.67 0.249294
Target:  5'- gCCGCCCCG-CAugCAa--GCGaCGCCGg -3'
miRNA:   3'- -GGUGGGGCgGUugGUggcCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 36941 0.67 0.24263
Target:  5'- -uGCCCCacGUUGACCACCaggaacaGGCGCGCg- -3'
miRNA:   3'- ggUGGGG--CGGUUGGUGG-------CCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 36242 0.73 0.080865
Target:  5'- aCCACUUCGCCAGCUcguGCgCGGCcGUGCCu -3'
miRNA:   3'- -GGUGGGGCGGUUGG---UG-GCCG-CGCGGc -5'
28138 3' -64 NC_005887.1 + 36096 0.67 0.249294
Target:  5'- gCGCCUCGCCGG-CGCCgaGGUGaCGCUGc -3'
miRNA:   3'- gGUGGGGCGGUUgGUGG--CCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 35750 0.72 0.097795
Target:  5'- aCCGCgaaGCCGGCCGCCGaucGCGCGCUGc -3'
miRNA:   3'- -GGUGgggCGGUUGGUGGC---CGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.