miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 42083 0.69 0.276765
Target:  5'- aGCGCugUcGCGUGggGCGCgaugCCGCGu -3'
miRNA:   3'- cCGCGugG-CGCACgaCGUGaa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 42079 0.67 0.396685
Target:  5'- cGCGCGCCGCG-GC-GaCACUcgacgugggCCGCa -3'
miRNA:   3'- cCGCGUGGCGCaCGaC-GUGAa--------GGCGc -5'
28141 3' -59.4 NC_005887.1 + 41952 0.7 0.250098
Target:  5'- cGGCGUGCuCGCGUGgUGCG--UgCGCGg -3'
miRNA:   3'- -CCGCGUG-GCGCACgACGUgaAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 41620 0.68 0.344938
Target:  5'- cGGCGCGgcCCGUGaggaucUGCUGCG--UCUGCGc -3'
miRNA:   3'- -CCGCGU--GGCGC------ACGACGUgaAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 40979 0.68 0.328801
Target:  5'- cGGUGCGCgCGCG-GUaGCcCUUCgGCGg -3'
miRNA:   3'- -CCGCGUG-GCGCaCGaCGuGAAGgCGC- -5'
28141 3' -59.4 NC_005887.1 + 40766 0.71 0.197844
Target:  5'- uGGCGCGCCGCGcGCcGC-CgagCCgGCGg -3'
miRNA:   3'- -CCGCGUGGCGCaCGaCGuGaa-GG-CGC- -5'
28141 3' -59.4 NC_005887.1 + 40580 0.7 0.256559
Target:  5'- cGCGCGCCGCGUGgUGgaugccgaaCACgacgUCGCGc -3'
miRNA:   3'- cCGCGUGGCGCACgAC---------GUGaa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 40190 0.7 0.225587
Target:  5'- cGCGCACCGCacGCUGUagGCgUCCuGCGg -3'
miRNA:   3'- cCGCGUGGCGcaCGACG--UGaAGG-CGC- -5'
28141 3' -59.4 NC_005887.1 + 40143 0.77 0.077358
Target:  5'- uGCGCGCUGCGcGCcGCGCUcgCCGCGu -3'
miRNA:   3'- cCGCGUGGCGCaCGaCGUGAa-GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 37521 0.68 0.32407
Target:  5'- cGGCGCACUGCaaaccgcgcaggcaaGcGCcGCGCUccacUCCGCa -3'
miRNA:   3'- -CCGCGUGGCG---------------CaCGaCGUGA----AGGCGc -5'
28141 3' -59.4 NC_005887.1 + 37400 0.67 0.361636
Target:  5'- cGGCG-ACCGaugccaGUGCcgGCGCUgCUGCGa -3'
miRNA:   3'- -CCGCgUGGCg-----CACGa-CGUGAaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 37400 0.66 0.433846
Target:  5'- uGGCGCugCGCGgucgcgacUGcCUGCACgccaggUGCGg -3'
miRNA:   3'- -CCGCGugGCGC--------AC-GACGUGaag---GCGC- -5'
28141 3' -59.4 NC_005887.1 + 36656 0.71 0.192154
Target:  5'- aGGUGCGCgGCGUcaucuauGCaUGCACUaCUGCGa -3'
miRNA:   3'- -CCGCGUGgCGCA-------CG-ACGUGAaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 35641 0.69 0.276765
Target:  5'- aGGCcaagGCCGUGUGCccgGCGCUcgCCGCa -3'
miRNA:   3'- -CCGcg--UGGCGCACGa--CGUGAa-GGCGc -5'
28141 3' -59.4 NC_005887.1 + 35333 0.7 0.225587
Target:  5'- cGCGCGCCGCGgcgGCcgGCcacgaGCUUCaCGCc -3'
miRNA:   3'- cCGCGUGGCGCa--CGa-CG-----UGAAG-GCGc -5'
28141 3' -59.4 NC_005887.1 + 35282 0.67 0.396685
Target:  5'- aGGCGCAUCGacuuaaGCaGCGCUUCgGCc -3'
miRNA:   3'- -CCGCGUGGCgca---CGaCGUGAAGgCGc -5'
28141 3' -59.4 NC_005887.1 + 34344 0.67 0.396685
Target:  5'- -cCGCACgGCGacgGCaUGCGCaagCCGCGa -3'
miRNA:   3'- ccGCGUGgCGCa--CG-ACGUGaa-GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 33829 0.66 0.432892
Target:  5'- cGGCaCGCCGCGccagaUGCUcgugaaggccggcGCGCUgauccucgCCGCGa -3'
miRNA:   3'- -CCGcGUGGCGC-----ACGA-------------CGUGAa-------GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 33641 0.66 0.41501
Target:  5'- -cCGUAgCGCGcGCUGCGC-UCgGCGa -3'
miRNA:   3'- ccGCGUgGCGCaCGACGUGaAGgCGC- -5'
28141 3' -59.4 NC_005887.1 + 33460 0.66 0.423424
Target:  5'- -aCGCACCGCGaugagccucauccUGCccgccggcgcgUGCACaUCCGCu -3'
miRNA:   3'- ccGCGUGGCGC-------------ACG-----------ACGUGaAGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.