miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 5486 0.66 0.443447
Target:  5'- uGGuCGCGCCG-GUcGCUGCGgcgCCGCc -3'
miRNA:   3'- -CC-GCGUGGCgCA-CGACGUgaaGGCGc -5'
28141 3' -59.4 NC_005887.1 + 13681 0.67 0.361636
Target:  5'- cGGC-CGCCGCGcGCcGCGCUgCCaGCa -3'
miRNA:   3'- -CCGcGUGGCGCaCGaCGUGAaGG-CGc -5'
28141 3' -59.4 NC_005887.1 + 40979 0.68 0.328801
Target:  5'- cGGUGCGCgCGCG-GUaGCcCUUCgGCGg -3'
miRNA:   3'- -CCGCGUG-GCGCaCGaCGuGAAGgCGC- -5'
28141 3' -59.4 NC_005887.1 + 27641 0.81 0.037663
Target:  5'- cGGCGCGCuCGC--GCUGUACUUCCGCu -3'
miRNA:   3'- -CCGCGUG-GCGcaCGACGUGAAGGCGc -5'
28141 3' -59.4 NC_005887.1 + 33460 0.66 0.423424
Target:  5'- -aCGCACCGCGaugagccucauccUGCccgccggcgcgUGCACaUCCGCu -3'
miRNA:   3'- ccGCGUGGCGC-------------ACG-----------ACGUGaAGGCGc -5'
28141 3' -59.4 NC_005887.1 + 22874 0.66 0.405782
Target:  5'- cGGaUGCGCCGCGUaGCUcGUgaacaacaGCggCCGCGc -3'
miRNA:   3'- -CC-GCGUGGCGCA-CGA-CG--------UGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 12785 0.66 0.405782
Target:  5'- aGCGCAuuCUGC-UGCUGCGCgaCCaGCGu -3'
miRNA:   3'- cCGCGU--GGCGcACGACGUGaaGG-CGC- -5'
28141 3' -59.4 NC_005887.1 + 24999 0.66 0.404867
Target:  5'- cGCGCACCGCGUcGCgaucgacaacggUGCcgauccgGCUgCUGCGa -3'
miRNA:   3'- cCGCGUGGCGCA-CG------------ACG-------UGAaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 34344 0.67 0.396685
Target:  5'- -cCGCACgGCGacgGCaUGCGCaagCCGCGa -3'
miRNA:   3'- ccGCGUGgCGCa--CG-ACGUGaa-GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 5556 0.67 0.361636
Target:  5'- cGGUGCugcgGCCG-GUGCUGCGCcaucggcCUGCGu -3'
miRNA:   3'- -CCGCG----UGGCgCACGACGUGaa-----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 15317 0.67 0.38772
Target:  5'- cGCaGCACUGCG-GCUGCcuGCUUcgggCCGCc -3'
miRNA:   3'- cCG-CGUGGCGCaCGACG--UGAA----GGCGc -5'
28141 3' -59.4 NC_005887.1 + 17584 0.67 0.396685
Target:  5'- uGC-CGCCcucgaGCGUGC-GCAUUUCCGUGc -3'
miRNA:   3'- cCGcGUGG-----CGCACGaCGUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 17692 0.66 0.433845
Target:  5'- cGGCGCugACCGuCGUGC-GCAgcguuuccauCUUgCGCGc -3'
miRNA:   3'- -CCGCG--UGGC-GCACGaCGU----------GAAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 4682 0.67 0.378889
Target:  5'- cGGCcaccgGCGCCGCGgcgagcaucUGUUGCAUcUgCGCGg -3'
miRNA:   3'- -CCG-----CGUGGCGC---------ACGACGUGaAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 33829 0.66 0.432892
Target:  5'- cGGCaCGCCGCGccagaUGCUcgugaaggccggcGCGCUgauccucgCCGCGa -3'
miRNA:   3'- -CCGcGUGGCGC-----ACGA-------------CGUGAa-------GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 2734 0.67 0.396685
Target:  5'- cGCGCACCaG-GUGCuUGUGCUcgcCCGCGc -3'
miRNA:   3'- cCGCGUGG-CgCACG-ACGUGAa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 5361 0.67 0.378889
Target:  5'- uGGCGUagaacuucGCCGCGcGCUGCucggGCgaCUGCGu -3'
miRNA:   3'- -CCGCG--------UGGCGCaCGACG----UGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 37400 0.67 0.361636
Target:  5'- cGGCG-ACCGaugccaGUGCcgGCGCUgCUGCGa -3'
miRNA:   3'- -CCGCgUGGCg-----CACGa-CGUGAaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 8645 0.66 0.424365
Target:  5'- aGCGUcgaacgaaaccuGCUGCgGUGCUGC-CUUCgGCa -3'
miRNA:   3'- cCGCG------------UGGCG-CACGACGuGAAGgCGc -5'
28141 3' -59.4 NC_005887.1 + 17117 0.66 0.405782
Target:  5'- cGGCGUccGCCcaaGCGUgccGCUGCGCaUCCGa- -3'
miRNA:   3'- -CCGCG--UGG---CGCA---CGACGUGaAGGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.