miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 5' -51.9 NC_005887.1 + 17259 0.66 0.817255
Target:  5'- gGCGCAacauUGCcgcGUGCGGCCGC--GUUCg -3'
miRNA:   3'- gCGUGU----ACGu--CAUGUUGGCGguCAAG- -5'
28141 5' -51.9 NC_005887.1 + 24009 0.66 0.817255
Target:  5'- gGUGCGUGCGcagACGGCCGCgAGg-- -3'
miRNA:   3'- gCGUGUACGUca-UGUUGGCGgUCaag -5'
28141 5' -51.9 NC_005887.1 + 11812 0.66 0.807351
Target:  5'- uCGUACGcuaagGCAG-GCGGCgGCCuGUUCu -3'
miRNA:   3'- -GCGUGUa----CGUCaUGUUGgCGGuCAAG- -5'
28141 5' -51.9 NC_005887.1 + 40953 0.66 0.807351
Target:  5'- aGCGCAUGCu---CGACCGCUucGGcgCg -3'
miRNA:   3'- gCGUGUACGucauGUUGGCGG--UCaaG- -5'
28141 5' -51.9 NC_005887.1 + 457 0.66 0.807351
Target:  5'- gGCGCGUGUGGUGCGggcaugagcaagcugACCGCaaagcagcagcuGUUCg -3'
miRNA:   3'- gCGUGUACGUCAUGU---------------UGGCGgu----------CAAG- -5'
28141 5' -51.9 NC_005887.1 + 28213 0.66 0.807351
Target:  5'- cCGCGCGUcucgGCGGUuuugaGCAGCgCGCgCAGcUUCg -3'
miRNA:   3'- -GCGUGUA----CGUCA-----UGUUG-GCG-GUC-AAG- -5'
28141 5' -51.9 NC_005887.1 + 23465 0.66 0.807351
Target:  5'- aCGCGC-UGC--UGCGGCUGCCAGc-- -3'
miRNA:   3'- -GCGUGuACGucAUGUUGGCGGUCaag -5'
28141 5' -51.9 NC_005887.1 + 13708 0.66 0.807351
Target:  5'- uGCACgucgGUGCugcucggcugAGUGCGGCCGCCGc--- -3'
miRNA:   3'- gCGUG----UACG----------UCAUGUUGGCGGUcaag -5'
28141 5' -51.9 NC_005887.1 + 14089 0.66 0.807351
Target:  5'- uGCGCcgGCGGcGCG-CCGgCGGUUg -3'
miRNA:   3'- gCGUGuaCGUCaUGUuGGCgGUCAAg -5'
28141 5' -51.9 NC_005887.1 + 34566 0.66 0.807351
Target:  5'- uGgGCGUGCAGUACcACgGuCCGGg-- -3'
miRNA:   3'- gCgUGUACGUCAUGuUGgC-GGUCaag -5'
28141 5' -51.9 NC_005887.1 + 41915 0.66 0.797243
Target:  5'- gGCACGaGCAucagGC-GCCGCCAGaUCg -3'
miRNA:   3'- gCGUGUaCGUca--UGuUGGCGGUCaAG- -5'
28141 5' -51.9 NC_005887.1 + 30809 0.66 0.786943
Target:  5'- gGCGC--GCAccGCGGCCucgGCCAGUUCg -3'
miRNA:   3'- gCGUGuaCGUcaUGUUGG---CGGUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 40578 0.67 0.765819
Target:  5'- gCGCGCucgaGCaAGUACAACC-CgCGGUUCc -3'
miRNA:   3'- -GCGUGua--CG-UCAUGUUGGcG-GUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 3798 0.67 0.765819
Target:  5'- cCGCAuCGUGCAGaACAGCgGCU--UUCg -3'
miRNA:   3'- -GCGU-GUACGUCaUGUUGgCGGucAAG- -5'
28141 5' -51.9 NC_005887.1 + 25627 0.67 0.765819
Target:  5'- uCGCACucaAUGCugauGUGCAgguugagcuucACCGCCAGc-- -3'
miRNA:   3'- -GCGUG---UACGu---CAUGU-----------UGGCGGUCaag -5'
28141 5' -51.9 NC_005887.1 + 5588 0.67 0.765819
Target:  5'- uCGUGCGUGCcugcugcggccGGUGCuGCgGCCGGUg- -3'
miRNA:   3'- -GCGUGUACG-----------UCAUGuUGgCGGUCAag -5'
28141 5' -51.9 NC_005887.1 + 34922 0.67 0.755021
Target:  5'- uCGCGCuGUGCGGaacuUGCcgUCGCCGGcUUCg -3'
miRNA:   3'- -GCGUG-UACGUC----AUGuuGGCGGUC-AAG- -5'
28141 5' -51.9 NC_005887.1 + 12625 0.67 0.755021
Target:  5'- uGCGCAUGCcg-GCGGCCGUCGa--- -3'
miRNA:   3'- gCGUGUACGucaUGUUGGCGGUcaag -5'
28141 5' -51.9 NC_005887.1 + 10182 0.67 0.755021
Target:  5'- uCGUACGUGCAGccgauCAgcugGCCGUCGGcgCg -3'
miRNA:   3'- -GCGUGUACGUCau---GU----UGGCGGUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 23344 0.67 0.744084
Target:  5'- gGCGCggGCuGcgGCAACCGCCAc--- -3'
miRNA:   3'- gCGUGuaCGuCa-UGUUGGCGGUcaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.