miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 5' -51.9 NC_005887.1 + 17259 0.66 0.817255
Target:  5'- gGCGCAacauUGCcgcGUGCGGCCGC--GUUCg -3'
miRNA:   3'- gCGUGU----ACGu--CAUGUUGGCGguCAAG- -5'
28141 5' -51.9 NC_005887.1 + 30566 0.69 0.592913
Target:  5'- gGCugAUGCAGUuuugcggugcgcaacGCAcgggccgcgucgcgcACCGCCuGUUCc -3'
miRNA:   3'- gCGugUACGUCA---------------UGU---------------UGGCGGuCAAG- -5'
28141 5' -51.9 NC_005887.1 + 36576 0.7 0.560779
Target:  5'- cCGCcCGaugcUGCGGU-CGACCGCaCGGUUCc -3'
miRNA:   3'- -GCGuGU----ACGUCAuGUUGGCG-GUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 26498 0.73 0.406897
Target:  5'- uCGCGCGgcUGCAGcgcgcguucccgcGCGGCCGCCAGcUCg -3'
miRNA:   3'- -GCGUGU--ACGUCa------------UGUUGGCGGUCaAG- -5'
28141 5' -51.9 NC_005887.1 + 14089 0.66 0.807351
Target:  5'- uGCGCcgGCGGcGCG-CCGgCGGUUg -3'
miRNA:   3'- gCGUGuaCGUCaUGUuGGCgGUCAAg -5'
28141 5' -51.9 NC_005887.1 + 34566 0.66 0.807351
Target:  5'- uGgGCGUGCAGUACcACgGuCCGGg-- -3'
miRNA:   3'- gCgUGUACGUCAUGuUGgC-GGUCaag -5'
28141 5' -51.9 NC_005887.1 + 5588 0.67 0.765819
Target:  5'- uCGUGCGUGCcugcugcggccGGUGCuGCgGCCGGUg- -3'
miRNA:   3'- -GCGUGUACG-----------UCAUGuUGgCGGUCAag -5'
28141 5' -51.9 NC_005887.1 + 10182 0.67 0.755021
Target:  5'- uCGUACGUGCAGccgauCAgcugGCCGUCGGcgCg -3'
miRNA:   3'- -GCGUGUACGUCau---GU----UGGCGGUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 42261 0.67 0.744084
Target:  5'- gCGCGCA-GCAaUGCGACgaGCCAGcgCg -3'
miRNA:   3'- -GCGUGUaCGUcAUGUUGg-CGGUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 25089 0.69 0.618374
Target:  5'- gCGCuACcgGCuGgccgGCGGCCGCCGGcgCg -3'
miRNA:   3'- -GCG-UGuaCGuCa---UGUUGGCGGUCaaG- -5'
28141 5' -51.9 NC_005887.1 + 14410 0.68 0.664746
Target:  5'- gGCACGcUGCuucACGAUCGCCGcGUUCa -3'
miRNA:   3'- gCGUGU-ACGucaUGUUGGCGGU-CAAG- -5'
28141 5' -51.9 NC_005887.1 + 23344 0.67 0.744084
Target:  5'- gGCGCggGCuGcgGCAACCGCCAc--- -3'
miRNA:   3'- gCGUGuaCGuCa-UGUUGGCGGUcaag -5'
28141 5' -51.9 NC_005887.1 + 24009 0.66 0.817255
Target:  5'- gGUGCGUGCGcagACGGCCGCgAGg-- -3'
miRNA:   3'- gCGUGUACGUca-UGUUGGCGgUCaag -5'
28141 5' -51.9 NC_005887.1 + 39605 0.69 0.641579
Target:  5'- uCGCGCGgauUGgGGUACAgaGCCggcGCCAGUUg -3'
miRNA:   3'- -GCGUGU---ACgUCAUGU--UGG---CGGUCAAg -5'
28141 5' -51.9 NC_005887.1 + 23465 0.66 0.807351
Target:  5'- aCGCGC-UGC--UGCGGCUGCCAGc-- -3'
miRNA:   3'- -GCGUGuACGucAUGUUGGCGGUCaag -5'
28141 5' -51.9 NC_005887.1 + 12625 0.67 0.755021
Target:  5'- uGCGCAUGCcg-GCGGCCGUCGa--- -3'
miRNA:   3'- gCGUGUACGucaUGUUGGCGGUcaag -5'
28141 5' -51.9 NC_005887.1 + 15320 0.69 0.629976
Target:  5'- cCGCGCA-GCAcUGCGGCUGCCuGcUUCg -3'
miRNA:   3'- -GCGUGUaCGUcAUGUUGGCGGuC-AAG- -5'
28141 5' -51.9 NC_005887.1 + 5483 0.7 0.583693
Target:  5'- uCGCGCcggucgcUGCGGcGCcgcCCGCCGGUUCa -3'
miRNA:   3'- -GCGUGu------ACGUCaUGuu-GGCGGUCAAG- -5'
28141 5' -51.9 NC_005887.1 + 13708 0.66 0.807351
Target:  5'- uGCACgucgGUGCugcucggcugAGUGCGGCCGCCGc--- -3'
miRNA:   3'- gCGUG----UACG----------UCAUGUUGGCGGUcaag -5'
28141 5' -51.9 NC_005887.1 + 41915 0.66 0.797243
Target:  5'- gGCACGaGCAucagGC-GCCGCCAGaUCg -3'
miRNA:   3'- gCGUGUaCGUca--UGuUGGCGGUCaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.