miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 3' -54.3 NC_005887.1 + 21880 0.66 0.712573
Target:  5'- uUCGGCGcGCccGGCagcgccgcGGACGUCGUg -3'
miRNA:   3'- cAGCCGC-CGuaCCGcuu-----CUUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 36807 0.66 0.712573
Target:  5'- -cCGcGCGGCAUcGGCacGAuuAACAUCGUu -3'
miRNA:   3'- caGC-CGCCGUA-CCG--CUucUUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 1954 0.66 0.701528
Target:  5'- aUCGGUGGguCGUgaacccGGCGGccgAGAACAUCGa -3'
miRNA:   3'- cAGCCGCC--GUA------CCGCU---UCUUGUAGCg -5'
28142 3' -54.3 NC_005887.1 + 34688 0.66 0.701528
Target:  5'- uGUCGaGCaGCAgcgGGCGGccguCGUCGCg -3'
miRNA:   3'- -CAGC-CGcCGUa--CCGCUucuuGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 14307 0.66 0.690413
Target:  5'- -cCGGCGGCAagaucggaUGccGCGccGAACAgCGCg -3'
miRNA:   3'- caGCCGCCGU--------AC--CGCuuCUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 35830 0.66 0.690413
Target:  5'- cUCGuGCGccGCGUcGGCGuAGAuCAUCGCc -3'
miRNA:   3'- cAGC-CGC--CGUA-CCGCuUCUuGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 33386 0.66 0.690413
Target:  5'- -cCGGCgcGGCA-GGaUGAGGcuCAUCGCg -3'
miRNA:   3'- caGCCG--CCGUaCC-GCUUCuuGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 5623 0.66 0.689298
Target:  5'- cGUCGGCGauagauuGCAgccacgugGGCGcAGAAUcgUGCg -3'
miRNA:   3'- -CAGCCGC-------CGUa-------CCGCuUCUUGuaGCG- -5'
28142 3' -54.3 NC_005887.1 + 26096 0.66 0.680358
Target:  5'- -gCGGCGuuuCAUGGCGucGAGCAggauguccugcacggCGCg -3'
miRNA:   3'- caGCCGCc--GUACCGCuuCUUGUa--------------GCG- -5'
28142 3' -54.3 NC_005887.1 + 896 0.66 0.679239
Target:  5'- aGUCaGGCGGCcucGGCuucGAuccGCGUCGCg -3'
miRNA:   3'- -CAG-CCGCCGua-CCGcuuCU---UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 38216 0.66 0.679239
Target:  5'- aGUCGcGCGcagccuugcGCGUGGCcGGGAugGUCGa -3'
miRNA:   3'- -CAGC-CGC---------CGUACCGcUUCUugUAGCg -5'
28142 3' -54.3 NC_005887.1 + 15033 0.66 0.679239
Target:  5'- -cUGcGCGGCGUaGGCGucGAguugcggcGCGUCGUa -3'
miRNA:   3'- caGC-CGCCGUA-CCGCuuCU--------UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 33716 0.66 0.675876
Target:  5'- -gCGGCGGUcgaucugcucgaucGcGGCGAGGAuCAgCGCg -3'
miRNA:   3'- caGCCGCCG--------------UaCCGCUUCUuGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 880 0.66 0.668017
Target:  5'- aUCGcGCGaGCAUGGCuGuuGAucGCgAUCGCg -3'
miRNA:   3'- cAGC-CGC-CGUACCG-CuuCU--UG-UAGCG- -5'
28142 3' -54.3 NC_005887.1 + 5872 0.66 0.668017
Target:  5'- --aGGCGaGUggGGCGAcagcuacgaccGGAACGUCGa -3'
miRNA:   3'- cagCCGC-CGuaCCGCU-----------UCUUGUAGCg -5'
28142 3' -54.3 NC_005887.1 + 31298 0.66 0.668017
Target:  5'- -aCGGUGGCAUGuuCGAuc-GCGUCGUg -3'
miRNA:   3'- caGCCGCCGUACc-GCUucuUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 14085 0.66 0.668017
Target:  5'- -cCGGCGGCGcgccGGCGGuu-GCGgaggCGCg -3'
miRNA:   3'- caGCCGCCGUa---CCGCUucuUGUa---GCG- -5'
28142 3' -54.3 NC_005887.1 + 36033 0.67 0.65676
Target:  5'- --gGGCGaacGCggGGCGAAGGGCAcgaGCg -3'
miRNA:   3'- cagCCGC---CGuaCCGCUUCUUGUag-CG- -5'
28142 3' -54.3 NC_005887.1 + 11019 0.67 0.65676
Target:  5'- -gCGGCGGUcUGGUcgaguguugGGAGAACcgggCGCa -3'
miRNA:   3'- caGCCGCCGuACCG---------CUUCUUGua--GCG- -5'
28142 3' -54.3 NC_005887.1 + 11604 0.67 0.65676
Target:  5'- aUCGGCGcucgacacGCA-GGUGcAGAGCGUgCGCa -3'
miRNA:   3'- cAGCCGC--------CGUaCCGCuUCUUGUA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.