miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28143 3' -59.8 NC_005887.1 + 4114 0.66 0.433145
Target:  5'- uCGCGCaGGACacGCGGCaGACGAUc -3'
miRNA:   3'- cGCGCGgCCUGacUGCCGgCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 12888 0.66 0.423706
Target:  5'- cCGUGCgCGaGCUGAuCGGCaCGGCGAg- -3'
miRNA:   3'- cGCGCG-GCcUGACU-GCCG-GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 1789 0.66 0.423706
Target:  5'- uGCGCGUCGGccGCUacccgaagGACGuGCCGcCGAc- -3'
miRNA:   3'- -CGCGCGGCC--UGA--------CUGC-CGGCuGCUaa -5'
28143 3' -59.8 NC_005887.1 + 5574 0.66 0.414392
Target:  5'- uGCG-GCCGGuGCUG-CGGCCGgugcuGCGGc- -3'
miRNA:   3'- -CGCgCGGCC-UGACuGCCGGC-----UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 23502 0.66 0.414392
Target:  5'- aGCG-GCgGGAUggcgGGCGGCugCGACGAg- -3'
miRNA:   3'- -CGCgCGgCCUGa---CUGCCG--GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 5396 0.66 0.405204
Target:  5'- aGCGCGaCCGGugaACcGGCGGgCGGCGc-- -3'
miRNA:   3'- -CGCGC-GGCC---UGaCUGCCgGCUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 2403 0.66 0.405204
Target:  5'- uGCGUGCCGcuGGCUucgaGGCGaagcccgcGCCGACGAa- -3'
miRNA:   3'- -CGCGCGGC--CUGA----CUGC--------CGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 39482 0.66 0.405204
Target:  5'- cGCGUGuuGccGCUGGCcaGGCUGACGAa- -3'
miRNA:   3'- -CGCGCggCc-UGACUG--CCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 10081 0.66 0.396146
Target:  5'- aGCGCgGCCGcGCgUGAugUGGUCGGCGAUc -3'
miRNA:   3'- -CGCG-CGGCcUG-ACU--GCCGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 25497 0.66 0.396146
Target:  5'- gGCG-GCuCGGAC-GAUGGCgCGGCGGg- -3'
miRNA:   3'- -CGCgCG-GCCUGaCUGCCG-GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 7603 0.66 0.38722
Target:  5'- aGCgGCGCCGGuugaucGAUGGgCGGCGAc- -3'
miRNA:   3'- -CG-CGCGGCCuga---CUGCCgGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 28399 0.66 0.38722
Target:  5'- cCGCGCCGGcGCaGACG-CCGACa--- -3'
miRNA:   3'- cGCGCGGCC-UGaCUGCcGGCUGcuaa -5'
28143 3' -59.8 NC_005887.1 + 19810 0.67 0.378427
Target:  5'- gGCGCGaCCGGAaacgGGgGcGUCGACGAc- -3'
miRNA:   3'- -CGCGC-GGCCUga--CUgC-CGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 8520 0.67 0.378427
Target:  5'- uUGCGCCGGGCgcucgaucgcguUGACGcggaucGCuCGGCGAUa -3'
miRNA:   3'- cGCGCGGCCUG------------ACUGC------CG-GCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 30823 0.67 0.378427
Target:  5'- cGCGCGCaCGGucgaGCUGACcGaCGGCGAa- -3'
miRNA:   3'- -CGCGCG-GCC----UGACUGcCgGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 30272 0.67 0.369769
Target:  5'- cCGCGaCGcGGCgUGGCuGGCCGGCGAg- -3'
miRNA:   3'- cGCGCgGC-CUG-ACUG-CCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 15932 0.67 0.369769
Target:  5'- cGCGgGCCGGAaucGAUGcGCCGGCc--- -3'
miRNA:   3'- -CGCgCGGCCUga-CUGC-CGGCUGcuaa -5'
28143 3' -59.8 NC_005887.1 + 26791 0.67 0.361247
Target:  5'- cGUGCGcCCGGucuaugucgaGCUGcccGCGGCCGcGCGAc- -3'
miRNA:   3'- -CGCGC-GGCC----------UGAC---UGCCGGC-UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 26141 0.67 0.361247
Target:  5'- cCGCGCgGGccGCUGACGcGCUGACc--- -3'
miRNA:   3'- cGCGCGgCC--UGACUGC-CGGCUGcuaa -5'
28143 3' -59.8 NC_005887.1 + 28736 0.67 0.3562
Target:  5'- cGCGCGCUaucgccguuguagguGaGACgcgGcauuACGGCCGGCGAUUu -3'
miRNA:   3'- -CGCGCGG---------------C-CUGa--C----UGCCGGCUGCUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.