miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 14600 0.66 0.609086
Target:  5'- gUCGGUACG-CGUacgGccGUCGGCGCcGUCg -3'
miRNA:   3'- -AGUCGUGCuGCGa--C--UAGCCGCGcUAG- -5'
28144 5' -56.1 NC_005887.1 + 27584 0.66 0.609086
Target:  5'- aCAGCGCGAgCGCgccGUCGaGCGuCGuGUCg -3'
miRNA:   3'- aGUCGUGCU-GCGac-UAGC-CGC-GC-UAG- -5'
28144 5' -56.1 NC_005887.1 + 40361 0.66 0.609086
Target:  5'- -gAGCGCGGCcgugccGCUcGUCGcGCGCGAg- -3'
miRNA:   3'- agUCGUGCUG------CGAcUAGC-CGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 40832 0.66 0.609086
Target:  5'- cCGGCucgGCGGCGCg---CGGCGCGc-- -3'
miRNA:   3'- aGUCG---UGCUGCGacuaGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 14719 0.66 0.59795
Target:  5'- -gGGCGCGGCGaucGcgCaGGCGaCGAUCg -3'
miRNA:   3'- agUCGUGCUGCga-CuaG-CCGC-GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 13517 0.66 0.59795
Target:  5'- cCGGCACGggcauGCGCgccacGAUCGcGaauGCGAUCg -3'
miRNA:   3'- aGUCGUGC-----UGCGa----CUAGC-Cg--CGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 39586 0.66 0.59795
Target:  5'- -gAGC-CGGCGCcaguUGGUgCGGCGUGAa- -3'
miRNA:   3'- agUCGuGCUGCG----ACUA-GCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 30031 0.66 0.59795
Target:  5'- aUCcGCGCGGCGgUGuucgCGGCGCucgacaccgucGAUCc -3'
miRNA:   3'- -AGuCGUGCUGCgACua--GCCGCG-----------CUAG- -5'
28144 5' -56.1 NC_005887.1 + 18600 0.66 0.586845
Target:  5'- gUCGGC-CGAuuacgguuCGUUGcUCGGCagcGCGAUCg -3'
miRNA:   3'- -AGUCGuGCU--------GCGACuAGCCG---CGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 33712 0.66 0.586845
Target:  5'- -uGGCGCGGCGgUcGAUCuGCuCGAUCg -3'
miRNA:   3'- agUCGUGCUGCgA-CUAGcCGcGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 41917 0.66 0.575778
Target:  5'- aCGGCACGAgcaucaggcgcCGCcaGAUCG-CGUGGUCg -3'
miRNA:   3'- aGUCGUGCU-----------GCGa-CUAGCcGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 39781 0.66 0.575778
Target:  5'- gCGGCGCucGCGCcGAUCGuuGCGCGcGUCg -3'
miRNA:   3'- aGUCGUGc-UGCGaCUAGC--CGCGC-UAG- -5'
28144 5' -56.1 NC_005887.1 + 24261 0.66 0.575778
Target:  5'- gCAGcCACGGCGagucgccgGAUa-GCGCGAUCa -3'
miRNA:   3'- aGUC-GUGCUGCga------CUAgcCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 12665 0.66 0.575778
Target:  5'- gUCAGCACGccgagcguCGCggccgGGUCGGCG-GAc- -3'
miRNA:   3'- -AGUCGUGCu-------GCGa----CUAGCCGCgCUag -5'
28144 5' -56.1 NC_005887.1 + 33811 0.66 0.56476
Target:  5'- aCGGcCACcACGCgggugucaGGUCGGCGCGGcgaUCg -3'
miRNA:   3'- aGUC-GUGcUGCGa-------CUAGCCGCGCU---AG- -5'
28144 5' -56.1 NC_005887.1 + 13343 0.66 0.56476
Target:  5'- uUCAGCGCcuGCGCcuuugugucGAUCGGCaacgaaucgacgGCGGUCa -3'
miRNA:   3'- -AGUCGUGc-UGCGa--------CUAGCCG------------CGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 33803 0.66 0.56476
Target:  5'- -aGGCcgGCG-CGCUGAuccUCGcCGCGAUCg -3'
miRNA:   3'- agUCG--UGCuGCGACU---AGCcGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 41867 0.67 0.553797
Target:  5'- aUCGGCuuGugGUUGGUUGGCaugaacGCGAc- -3'
miRNA:   3'- -AGUCGugCugCGACUAGCCG------CGCUag -5'
28144 5' -56.1 NC_005887.1 + 13652 0.67 0.553797
Target:  5'- gCAGCAcCGACGUgcagaacgcGAUcagCGGCGCGAc- -3'
miRNA:   3'- aGUCGU-GCUGCGa--------CUA---GCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 8161 0.67 0.553797
Target:  5'- -gAGCGCGGCgaGCUGcgCGcGCGCuuUCg -3'
miRNA:   3'- agUCGUGCUG--CGACuaGC-CGCGcuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.