Results 21 - 40 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 24255 | 0.73 | 0.218835 |
Target: 5'- gUCGGCaacACGACGCUGugggCGGCuauCGAUCg -3' miRNA: 3'- -AGUCG---UGCUGCGACua--GCCGc--GCUAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 32780 | 0.73 | 0.243353 |
Target: 5'- cCGGCuCGuGCGCagGAUCGGCGCGcgCc -3' miRNA: 3'- aGUCGuGC-UGCGa-CUAGCCGCGCuaG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 15381 | 0.73 | 0.218835 |
Target: 5'- gCAGguCGacgccGCGCUGAUCGcGCGCGggCa -3' miRNA: 3'- aGUCguGC-----UGCGACUAGC-CGCGCuaG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 16578 | 0.73 | 0.218835 |
Target: 5'- cCGGCgGCGACGC-GAUCGGCcuGCGAcaUCg -3' miRNA: 3'- aGUCG-UGCUGCGaCUAGCCG--CGCU--AG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 37260 | 0.73 | 0.22476 |
Target: 5'- gCGGCACGuCGCUGGauuucucgggagUCGGUGCaGUCg -3' miRNA: 3'- aGUCGUGCuGCGACU------------AGCCGCGcUAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 10979 | 0.73 | 0.237017 |
Target: 5'- aUCGGCugGACGCUcGUCgaggauGGCGUGGUg -3' miRNA: 3'- -AGUCGugCUGCGAcUAG------CCGCGCUAg -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 33289 | 0.72 | 0.263208 |
Target: 5'- -gAGCACGGCGCgaccGAgugccagugCGGCGCGuUCa -3' miRNA: 3'- agUCGUGCUGCGa---CUa--------GCCGCGCuAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 29840 | 0.72 | 0.270112 |
Target: 5'- gCuGCGCGACGCggcGAUCcuCGCGAUCa -3' miRNA: 3'- aGuCGUGCUGCGa--CUAGccGCGCUAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 12539 | 0.72 | 0.284358 |
Target: 5'- aUCAGCGCGA-GCUGAgaaGCGCGcGUCg -3' miRNA: 3'- -AGUCGUGCUgCGACUagcCGCGC-UAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 19187 | 0.72 | 0.256447 |
Target: 5'- gCGGCGCgGGCGUgGAgacaggCGGCGCGGUUa -3' miRNA: 3'- aGUCGUG-CUGCGaCUa-----GCCGCGCUAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 5133 | 0.72 | 0.263208 |
Target: 5'- cUCGGCAUGaccGCGCUGcccgacGUCGGCGCGc-- -3' miRNA: 3'- -AGUCGUGC---UGCGAC------UAGCCGCGCuag -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 19362 | 0.72 | 0.284358 |
Target: 5'- gCAGCA-GACGCgug-CGGCGaCGAUCa -3' miRNA: 3'- aGUCGUgCUGCGacuaGCCGC-GCUAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 35656 | 0.72 | 0.284358 |
Target: 5'- -gAGCuCGACGCUG-UCGacauacagcagcGCGCGAUCg -3' miRNA: 3'- agUCGuGCUGCGACuAGC------------CGCGCUAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 16732 | 0.72 | 0.287278 |
Target: 5'- cCGGCGCGAucaagucggauuacaUGCggcagacGAUgGGCGCGAUCg -3' miRNA: 3'- aGUCGUGCU---------------GCGa------CUAgCCGCGCUAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 2646 | 0.72 | 0.277162 |
Target: 5'- gUCAGUACc-UGCUGGUgGGCGCGggCg -3' miRNA: 3'- -AGUCGUGcuGCGACUAgCCGCGCuaG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 25191 | 0.71 | 0.314616 |
Target: 5'- gCAGCuGCGGCGCUGGaucUCGGCcggacaacCGGUCg -3' miRNA: 3'- aGUCG-UGCUGCGACU---AGCCGc-------GCUAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 16481 | 0.71 | 0.321751 |
Target: 5'- gCGGCAgGAUccggcggGCUGGUCGGCGauGUCg -3' miRNA: 3'- aGUCGUgCUG-------CGACUAGCCGCgcUAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 3310 | 0.71 | 0.330635 |
Target: 5'- --uGCGCaGCGC-GAgCGGCGCGGUCg -3' miRNA: 3'- aguCGUGcUGCGaCUaGCCGCGCUAG- -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 12891 | 0.71 | 0.299191 |
Target: 5'- --uGCGCGA-GCUGAUCGGCacgGCGAg- -3' miRNA: 3'- aguCGUGCUgCGACUAGCCG---CGCUag -5' |
|||||||
28144 | 5' | -56.1 | NC_005887.1 | + | 12705 | 0.71 | 0.328194 |
Target: 5'- gUCAcGCGCGcACGCUGGUCGcgcagcagcagaauGCGCucGAUCg -3' miRNA: 3'- -AGU-CGUGC-UGCGACUAGC--------------CGCG--CUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home