miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 33289 0.72 0.263208
Target:  5'- -gAGCACGGCGCgaccGAgugccagugCGGCGCGuUCa -3'
miRNA:   3'- agUCGUGCUGCGa---CUa--------GCCGCGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 32780 0.73 0.243353
Target:  5'- cCGGCuCGuGCGCagGAUCGGCGCGcgCc -3'
miRNA:   3'- aGUCGuGC-UGCGa-CUAGCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 32739 0.7 0.36972
Target:  5'- gUAGCGCGGCGCUcgcgugcgcgcCGGCGCGcgCc -3'
miRNA:   3'- aGUCGUGCUGCGAcua--------GCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 32425 0.67 0.51066
Target:  5'- cCGGCgGCGAUG-UGGcCGGCGgCGAUCa -3'
miRNA:   3'- aGUCG-UGCUGCgACUaGCCGC-GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 31715 0.67 0.532071
Target:  5'- -uGGCGCGAUGCUGAcUGGCuGCu--- -3'
miRNA:   3'- agUCGUGCUGCGACUaGCCG-CGcuag -5'
28144 5' -56.1 NC_005887.1 + 30938 0.67 0.542898
Target:  5'- cCAGCGCGcucgGCGgUGAugUCGGCGCc--- -3'
miRNA:   3'- aGUCGUGC----UGCgACU--AGCCGCGcuag -5'
28144 5' -56.1 NC_005887.1 + 30031 0.66 0.59795
Target:  5'- aUCcGCGCGGCGgUGuucgCGGCGCucgacaccgucGAUCc -3'
miRNA:   3'- -AGuCGUGCUGCgACua--GCCGCG-----------CUAG- -5'
28144 5' -56.1 NC_005887.1 + 29840 0.72 0.270112
Target:  5'- gCuGCGCGACGCggcGAUCcuCGCGAUCa -3'
miRNA:   3'- aGuCGUGCUGCGa--CUAGccGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 28802 0.68 0.438905
Target:  5'- gCGGCuuucGCGAaauccaucaGCaGAUCGGCGCGGUa -3'
miRNA:   3'- aGUCG----UGCUg--------CGaCUAGCCGCGCUAg -5'
28144 5' -56.1 NC_005887.1 + 28568 0.67 0.521323
Target:  5'- -aGGCGuCGccgccCGCUGcgCGGaCGCGGUCg -3'
miRNA:   3'- agUCGU-GCu----GCGACuaGCC-GCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 28358 0.67 0.542898
Target:  5'- gUCGcCACGACGCUGcgcgcgcUCGGCGUGc-- -3'
miRNA:   3'- -AGUcGUGCUGCGACu------AGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 28261 0.78 0.103094
Target:  5'- --cGCGCGGCGCUGAUgCGGCGCa--- -3'
miRNA:   3'- aguCGUGCUGCGACUA-GCCGCGcuag -5'
28144 5' -56.1 NC_005887.1 + 28008 0.69 0.432046
Target:  5'- gUCGGC-CGGCGUUucuucacGAauccacuucacugcgUCGGCGUGAUCg -3'
miRNA:   3'- -AGUCGuGCUGCGA-------CU---------------AGCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 27667 0.74 0.191186
Target:  5'- aUCAGCgccuucgacACGACGCUcGA-CGGCGCGcUCg -3'
miRNA:   3'- -AGUCG---------UGCUGCGA-CUaGCCGCGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 27584 0.66 0.609086
Target:  5'- aCAGCGCGAgCGCgccGUCGaGCGuCGuGUCg -3'
miRNA:   3'- aGUCGUGCU-GCGac-UAGC-CGC-GC-UAG- -5'
28144 5' -56.1 NC_005887.1 + 27411 0.68 0.438905
Target:  5'- gUCuGCGCGcCGCUGcgcgUGGCGCaGUCg -3'
miRNA:   3'- -AGuCGUGCuGCGACua--GCCGCGcUAG- -5'
28144 5' -56.1 NC_005887.1 + 25191 0.71 0.314616
Target:  5'- gCAGCuGCGGCGCUGGaucUCGGCcggacaacCGGUCg -3'
miRNA:   3'- aGUCG-UGCUGCGACU---AGCCGc-------GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 24261 0.66 0.575778
Target:  5'- gCAGcCACGGCGagucgccgGAUa-GCGCGAUCa -3'
miRNA:   3'- aGUC-GUGCUGCga------CUAgcCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 24255 0.73 0.218835
Target:  5'- gUCGGCaacACGACGCUGugggCGGCuauCGAUCg -3'
miRNA:   3'- -AGUCG---UGCUGCGACua--GCCGc--GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 23650 0.67 0.496937
Target:  5'- gCuGUACG-CGCUGAUugucggagauaaucCGGCGCGcgCg -3'
miRNA:   3'- aGuCGUGCuGCGACUA--------------GCCGCGCuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.