Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28147 | 5' | -55.4 | NC_005887.1 | + | 21116 | 1.09 | 0.000717 |
Target: 5'- cCGCAAACACGGUGCUCGCCAACGCCAc -3' miRNA: 3'- -GCGUUUGUGCCACGAGCGGUUGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 34019 | 0.77 | 0.136399 |
Target: 5'- aCGCcgcACGCGacGUGCUCGCCgAGCGCCGu -3' miRNA: 3'- -GCGuu-UGUGC--CACGAGCGG-UUGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 4855 | 0.77 | 0.140322 |
Target: 5'- cCGCGAGCACGGc-CUCGCCGgcugGCGUCAg -3' miRNA: 3'- -GCGUUUGUGCCacGAGCGGU----UGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 15626 | 0.76 | 0.161528 |
Target: 5'- aGCAGGCGgcCGG-GCUCGCCGaucaggGCGCCGu -3' miRNA: 3'- gCGUUUGU--GCCaCGAGCGGU------UGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 17957 | 0.75 | 0.175599 |
Target: 5'- uCGCAcauauGCGCGG-GCUCGCCGGCaucgGCCGc -3' miRNA: 3'- -GCGUu----UGUGCCaCGAGCGGUUG----CGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 18139 | 0.75 | 0.190752 |
Target: 5'- gGCgAAGCGCGG-GC-CGCCGACGUCGu -3' miRNA: 3'- gCG-UUUGUGCCaCGaGCGGUUGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 17656 | 0.75 | 0.196052 |
Target: 5'- gCGCGAGCGCGGgauugacgggcgUGUUCGUC-GCGCCGg -3' miRNA: 3'- -GCGUUUGUGCC------------ACGAGCGGuUGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 36117 | 0.75 | 0.180527 |
Target: 5'- gCGCGAGCGCGucgagGCcuugcgccUCGCCGGCGCCGa -3' miRNA: 3'- -GCGUUUGUGCca---CG--------AGCGGUUGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 42048 | 0.75 | 0.175113 |
Target: 5'- gGCGGACAUGGaccUGCUCGCCGacuggaucgacgaGCGCUg -3' miRNA: 3'- gCGUUUGUGCC---ACGAGCGGU-------------UGCGGu -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 2555 | 0.74 | 0.236852 |
Target: 5'- aGCAGGC-CGG-GCUCGCCGucgaugauccGCGUCAg -3' miRNA: 3'- gCGUUUGuGCCaCGAGCGGU----------UGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 22979 | 0.74 | 0.236222 |
Target: 5'- gCGCGAGCAUGGcGCgUUGCCGcugaucgACGCCGg -3' miRNA: 3'- -GCGUUUGUGCCaCG-AGCGGU-------UGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 14647 | 0.74 | 0.20704 |
Target: 5'- aGCcGGCGCGGUGCU-GCCcguCGCCGg -3' miRNA: 3'- gCGuUUGUGCCACGAgCGGuu-GCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 8672 | 0.73 | 0.24323 |
Target: 5'- uGCAccgAGCaACGGcgagaGCUCGCCAGCGUCGa -3' miRNA: 3'- gCGU---UUG-UGCCa----CGAGCGGUUGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 4602 | 0.73 | 0.24323 |
Target: 5'- gCGCAGAUGCaacagaUGCUCGCCGcgGCGCCGg -3' miRNA: 3'- -GCGUUUGUGcc----ACGAGCGGU--UGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 6675 | 0.73 | 0.263223 |
Target: 5'- uGuCGGAUcCGGUGC-CGCCAGCGUCGa -3' miRNA: 3'- gC-GUUUGuGCCACGaGCGGUUGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 41332 | 0.73 | 0.270178 |
Target: 5'- gCGCAggUcgACGGcGCcaUUGCCGACGCCGa -3' miRNA: 3'- -GCGUuuG--UGCCaCG--AGCGGUUGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 2742 | 0.72 | 0.291929 |
Target: 5'- aCGCuucACGCGcaccaggugcuuGUGCUCGCCcGCGCCc -3' miRNA: 3'- -GCGuu-UGUGC------------CACGAGCGGuUGCGGu -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 2412 | 0.72 | 0.291929 |
Target: 5'- uGCGAGCGCuGGUcGCcCGCCGgauCGCCAu -3' miRNA: 3'- gCGUUUGUG-CCA-CGaGCGGUu--GCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 39603 | 0.72 | 0.291929 |
Target: 5'- gCGCGGAUugGG-GUacagaGCCGGCGCCAg -3' miRNA: 3'- -GCGUUUGugCCaCGag---CGGUUGCGGU- -5' |
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28147 | 5' | -55.4 | NC_005887.1 | + | 27099 | 0.72 | 0.299478 |
Target: 5'- aGCGuGCGCGGUcgcgcGCUCGCCGagguuGCGCaCAc -3' miRNA: 3'- gCGUuUGUGCCA-----CGAGCGGU-----UGCG-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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