miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 3' -61.4 NC_005887.1 + 28651 0.67 0.328804
Target:  5'- ----aCCUACCuCGUCGACCGCGUCc -3'
miRNA:   3'- cgugcGGGUGGcGCGGCUGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 9460 0.66 0.336633
Target:  5'- uGCugGuauuCCCAuuCCGCGCCGAucgacCCGUAUUc -3'
miRNA:   3'- -CGugC----GGGU--GGCGCGGCU-----GGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 11722 0.66 0.360928
Target:  5'- aGCA-GCCCcugauACCGCGUCuGCaaCGCGUCGa -3'
miRNA:   3'- -CGUgCGGG-----UGGCGCGGcUG--GCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 40091 0.66 0.37779
Target:  5'- gGC-CGCCUcgaGCCGCGCCaugaugcgcACCGCGaCGu -3'
miRNA:   3'- -CGuGCGGG---UGGCGCGGc--------UGGCGUaGC- -5'
28149 3' -61.4 NC_005887.1 + 15619 0.67 0.291691
Target:  5'- aGCGCGgUCGCgCGCGCCGAgUCGUcgCc -3'
miRNA:   3'- -CGUGCgGGUG-GCGCGGCU-GGCGuaGc -5'
28149 3' -61.4 NC_005887.1 + 1860 0.67 0.321111
Target:  5'- gGCACGUCCuucggguaGCgGCCGACgCGCAggUCGa -3'
miRNA:   3'- -CGUGCGGGugg-----CG-CGGCUG-GCGU--AGC- -5'
28149 3' -61.4 NC_005887.1 + 8116 0.66 0.344597
Target:  5'- cGCACGCagACaCGCGUCGAgCaCGUCGu -3'
miRNA:   3'- -CGUGCGggUG-GCGCGGCUgGcGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 2931 0.66 0.37779
Target:  5'- uGCGCGUuauCCACCGC-CUG-CgGCAUUGg -3'
miRNA:   3'- -CGUGCG---GGUGGCGcGGCuGgCGUAGC- -5'
28149 3' -61.4 NC_005887.1 + 32242 0.67 0.321111
Target:  5'- aCugGCUCAUCgcugaGCGCCGACCuGCAg-- -3'
miRNA:   3'- cGugCGGGUGG-----CGCGGCUGG-CGUagc -5'
28149 3' -61.4 NC_005887.1 + 41146 0.66 0.37779
Target:  5'- uGCcuCGUCCACgagCGCGCgGAUCGUGUCc -3'
miRNA:   3'- -CGu-GCGGGUG---GCGCGgCUGGCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 14450 0.66 0.344597
Target:  5'- cGUACGCgCG-CGCGCCGAgCgGCGacUCGa -3'
miRNA:   3'- -CGUGCGgGUgGCGCGGCU-GgCGU--AGC- -5'
28149 3' -61.4 NC_005887.1 + 36379 0.67 0.328804
Target:  5'- ---aGUgCGCgGCGUCGACCGCcgCGc -3'
miRNA:   3'- cgugCGgGUGgCGCGGCUGGCGuaGC- -5'
28149 3' -61.4 NC_005887.1 + 8514 0.66 0.352696
Target:  5'- cGgGCGCUCgAUCGCGuuGACgCGgAUCGc -3'
miRNA:   3'- -CgUGCGGG-UGGCGCggCUG-GCgUAGC- -5'
28149 3' -61.4 NC_005887.1 + 17702 0.66 0.360928
Target:  5'- uGCA-GCuUCACgGCGCUGACCGUcgUGc -3'
miRNA:   3'- -CGUgCG-GGUGgCGCGGCUGGCGuaGC- -5'
28149 3' -61.4 NC_005887.1 + 17116 0.66 0.369293
Target:  5'- gGCGucCGCCCAagCGUGCCGcugCGCAUCc -3'
miRNA:   3'- -CGU--GCGGGUg-GCGCGGCug-GCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 34015 0.66 0.376935
Target:  5'- cGCACGCgacgugcUCGCCgaGCGCCGuCgGCAggUCGa -3'
miRNA:   3'- -CGUGCG-------GGUGG--CGCGGCuGgCGU--AGC- -5'
28149 3' -61.4 NC_005887.1 + 15451 0.68 0.284673
Target:  5'- cGCGCGCgaucagCGCgGCGUCGACCuGC-UCGg -3'
miRNA:   3'- -CGUGCGg-----GUGgCGCGGCUGG-CGuAGC- -5'
28149 3' -61.4 NC_005887.1 + 23629 0.67 0.291691
Target:  5'- cGCACuGCCgGCCGgcgaUGCgGGCgGCGUCa -3'
miRNA:   3'- -CGUG-CGGgUGGC----GCGgCUGgCGUAGc -5'
28149 3' -61.4 NC_005887.1 + 4684 0.67 0.30613
Target:  5'- -gGCGgCCACCgGCGCCGcgGCgaGCAUCu -3'
miRNA:   3'- cgUGCgGGUGG-CGCGGC--UGg-CGUAGc -5'
28149 3' -61.4 NC_005887.1 + 16985 0.67 0.321111
Target:  5'- uCGCGCCCGUCGUcuuGCCGAuCUGC-UCGg -3'
miRNA:   3'- cGUGCGGGUGGCG---CGGCU-GGCGuAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.