miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 3' -58.2 NC_005887.1 + 15615 0.67 0.411635
Target:  5'- gGGCGUCGCGCagcagGCGGCcgggcucgCCGAUCaGGGc -3'
miRNA:   3'- gUUGCGGCGUGa----CGCCG--------GGUUAG-CCU- -5'
28151 3' -58.2 NC_005887.1 + 41994 0.67 0.402339
Target:  5'- gCAGCaCgGC-CUGCGGCCCAcGUCGa- -3'
miRNA:   3'- -GUUGcGgCGuGACGCCGGGU-UAGCcu -5'
28151 3' -58.2 NC_005887.1 + 23650 0.67 0.399576
Target:  5'- uCAGCGCgucguagucgcguuCGCACUGcCGGCCggCGAUgCGGGc -3'
miRNA:   3'- -GUUGCG--------------GCGUGAC-GCCGG--GUUA-GCCU- -5'
28151 3' -58.2 NC_005887.1 + 13379 0.67 0.393178
Target:  5'- uGGCGCuCGCGCUGaaGGCCgGcgCGGc -3'
miRNA:   3'- gUUGCG-GCGUGACg-CCGGgUuaGCCu -5'
28151 3' -58.2 NC_005887.1 + 17025 0.68 0.384153
Target:  5'- --uCGCCGaCAUUGCcGCCCGcgCGGu -3'
miRNA:   3'- guuGCGGC-GUGACGcCGGGUuaGCCu -5'
28151 3' -58.2 NC_005887.1 + 41571 0.68 0.378805
Target:  5'- cCAGCGCCgagacguuccugucgGCcaGCgGCGGCCCAGgugCGGc -3'
miRNA:   3'- -GUUGCGG---------------CG--UGaCGCCGGGUUa--GCCu -5'
28151 3' -58.2 NC_005887.1 + 15060 0.68 0.366521
Target:  5'- gGGCgGCaCGC-CUGCGGCCUGcgCGGc -3'
miRNA:   3'- gUUG-CG-GCGuGACGCCGGGUuaGCCu -5'
28151 3' -58.2 NC_005887.1 + 15664 0.68 0.357916
Target:  5'- gCGACGCCcguGCGCUGCGuCUCAGcuUCGGc -3'
miRNA:   3'- -GUUGCGG---CGUGACGCcGGGUU--AGCCu -5'
28151 3' -58.2 NC_005887.1 + 31743 0.68 0.349454
Target:  5'- aAACGCUuCGCUGCGcCCCGugugacaagucGUCGGAg -3'
miRNA:   3'- gUUGCGGcGUGACGCcGGGU-----------UAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 1542 0.69 0.332961
Target:  5'- gAGCGCCGCACgccgucgGCgucgGGCUCcugcucgcacauGAUCGGAa -3'
miRNA:   3'- gUUGCGGCGUGa------CG----CCGGG------------UUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 13619 0.69 0.332961
Target:  5'- gCAGCGCgGCGCgcgGCGGCCgCAcUCa-- -3'
miRNA:   3'- -GUUGCGgCGUGa--CGCCGG-GUuAGccu -5'
28151 3' -58.2 NC_005887.1 + 16002 0.69 0.324931
Target:  5'- gCGugGCCgGCGCaucgauucCGGCCCGcgCGGAa -3'
miRNA:   3'- -GUugCGG-CGUGac------GCCGGGUuaGCCU- -5'
28151 3' -58.2 NC_005887.1 + 601 0.69 0.317046
Target:  5'- cCGGCGCgGCGCgcgGCGGCCgAcgCGu- -3'
miRNA:   3'- -GUUGCGgCGUGa--CGCCGGgUuaGCcu -5'
28151 3' -58.2 NC_005887.1 + 12207 0.69 0.317046
Target:  5'- aCAGCGCCGCGCcggGCGcGCCgGAUUu-- -3'
miRNA:   3'- -GUUGCGGCGUGa--CGC-CGGgUUAGccu -5'
28151 3' -58.2 NC_005887.1 + 18086 0.69 0.316266
Target:  5'- cCGGCGCgcguaagCGCGCgGCGGuCCCAuUCGGu -3'
miRNA:   3'- -GUUGCG-------GCGUGaCGCC-GGGUuAGCCu -5'
28151 3' -58.2 NC_005887.1 + 27663 0.69 0.309306
Target:  5'- gAGCuGCCGCGCgcGCGGCUUGAUCGu- -3'
miRNA:   3'- gUUG-CGGCGUGa-CGCCGGGUUAGCcu -5'
28151 3' -58.2 NC_005887.1 + 31562 0.69 0.301711
Target:  5'- -cGCGCCGCGCgcGCGGCa--AUCGGu -3'
miRNA:   3'- guUGCGGCGUGa-CGCCGgguUAGCCu -5'
28151 3' -58.2 NC_005887.1 + 24246 0.7 0.259158
Target:  5'- aCGACGCUGUgg-GCGGCUauCGAUCGGGc -3'
miRNA:   3'- -GUUGCGGCGugaCGCCGG--GUUAGCCU- -5'
28151 3' -58.2 NC_005887.1 + 15386 0.7 0.252561
Target:  5'- uCGACGCCGCGCUGauCGcGCgCGGgcagCGGAu -3'
miRNA:   3'- -GUUGCGGCGUGAC--GC-CGgGUUa---GCCU- -5'
28151 3' -58.2 NC_005887.1 + 15319 0.71 0.246103
Target:  5'- -cGCGCaGCACUGCGGCugCCugcuUCGGGc -3'
miRNA:   3'- guUGCGgCGUGACGCCG--GGuu--AGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.