Results 21 - 40 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28151 | 5' | -51.3 | NC_005887.1 | + | 6360 | 0.75 | 0.366565 |
Target: 5'- cGGUGUGGGCAGACcggugcgaaccGACGUGCgGUGGCc -3' miRNA: 3'- -CUACGCUUGUUUG-----------UUGCGUGgCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 16835 | 0.75 | 0.372956 |
Target: 5'- --cGCGAugGAgcGCGACaucauccgcgagguGUACCGCGGCg -3' miRNA: 3'- cuaCGCUugUU--UGUUG--------------CGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 1462 | 0.75 | 0.339176 |
Target: 5'- uGUGCGAGCAggagcccgacgccGACGGCGUGCggcgcucgCGCGGCg -3' miRNA: 3'- cUACGCUUGU-------------UUGUUGCGUG--------GCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 13426 | 0.75 | 0.348722 |
Target: 5'- -cUGCuGAcgACGAGCGGCGCACCGCucaGCa -3' miRNA: 3'- cuACG-CU--UGUUUGUUGCGUGGCGc--CG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 8690 | 0.75 | 0.366565 |
Target: 5'- cGGUGCaGGGCccGGCGAUcCGCCGCGGCg -3' miRNA: 3'- -CUACG-CUUGu-UUGUUGcGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 386 | 0.75 | 0.366565 |
Target: 5'- uGGUGCGAaaagacggGCAAGCGccgcgaagACGCGCCGCGccGCc -3' miRNA: 3'- -CUACGCU--------UGUUUGU--------UGCGUGGCGC--CG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 16942 | 0.74 | 0.394484 |
Target: 5'- cGAUGCguGAGCGcuuCAAcCGCGCgGCGGCa -3' miRNA: 3'- -CUACG--CUUGUuu-GUU-GCGUGgCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 38006 | 0.74 | 0.385026 |
Target: 5'- gGAUGCGGGCugauucAACAACGCgcgccuGCUGgGGCa -3' miRNA: 3'- -CUACGCUUGu-----UUGUUGCG------UGGCgCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 30711 | 0.73 | 0.432771 |
Target: 5'- aGGUGC--GCGAGCAgcuugucGCGCugCGUGGCc -3' miRNA: 3'- -CUACGcuUGUUUGU-------UGCGugGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 26623 | 0.73 | 0.454263 |
Target: 5'- --gGaCGAcgGCAgcGACAcCGCACCGUGGCa -3' miRNA: 3'- cuaC-GCU--UGU--UUGUuGCGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 29126 | 0.73 | 0.433781 |
Target: 5'- uAUGCGGuugaGAACGAUGUACCGgcCGGCg -3' miRNA: 3'- cUACGCUug--UUUGUUGCGUGGC--GCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 25615 | 0.73 | 0.475258 |
Target: 5'- --cGCGGaagcagcuACGAAC-GCGCACCGCucGGCg -3' miRNA: 3'- cuaCGCU--------UGUUUGuUGCGUGGCG--CCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 30608 | 0.73 | 0.454263 |
Target: 5'- --cGCGAGCAAcucgcGCAGCGCGUC-CGGCa -3' miRNA: 3'- cuaCGCUUGUU-----UGUUGCGUGGcGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 12414 | 0.73 | 0.433781 |
Target: 5'- --aGCa---GGGCAACGaCACCGCGGCg -3' miRNA: 3'- cuaCGcuugUUUGUUGC-GUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 15244 | 0.73 | 0.443955 |
Target: 5'- --gGCGGcccgaaGCAGGCAGCcgcaguGCugCGCGGCg -3' miRNA: 3'- cuaCGCU------UGUUUGUUG------CGugGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 4606 | 0.73 | 0.443955 |
Target: 5'- aGAUGC-AACAGAU-GCuCGCCGCGGCg -3' miRNA: 3'- -CUACGcUUGUUUGuUGcGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 33352 | 0.73 | 0.475258 |
Target: 5'- --cGCGGAUGGAaguGCGCcgGCUGCGGCg -3' miRNA: 3'- cuaCGCUUGUUUgu-UGCG--UGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 33187 | 0.72 | 0.52971 |
Target: 5'- aGcgGcCGGACGAGCccguccagaugAACGCGCCGCacuGGCa -3' miRNA: 3'- -CuaC-GCUUGUUUG-----------UUGCGUGGCG---CCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 33370 | 0.72 | 0.52971 |
Target: 5'- --aGCGGAUguGC-ACGCGCCggcGCGGCa -3' miRNA: 3'- cuaCGCUUGuuUGuUGCGUGG---CGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 35650 | 0.72 | 0.48272 |
Target: 5'- cGGUGCGAgcucgacgcugucgACAuacAGCAGCGCGCgaucgGCGGCc -3' miRNA: 3'- -CUACGCU--------------UGU---UUGUUGCGUGg----CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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