miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 2328 0.66 0.255446
Target:  5'- uCGCUgGCAUCuaUGGCgaucCGGCGG-GCGa -3'
miRNA:   3'- -GCGGgCGUAGcgGCCG----GCCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 4288 0.66 0.255446
Target:  5'- uCGCgCGCGaggucgacauccUCGCCgaGGCCGGcCAGcUGCc -3'
miRNA:   3'- -GCGgGCGU------------AGCGG--CCGGCC-GUC-ACGc -5'
28152 3' -64.5 NC_005887.1 + 33447 0.66 0.255446
Target:  5'- aGCCU-CAUCcuGCCcGCCGGCGcGUGCa -3'
miRNA:   3'- gCGGGcGUAG--CGGcCGGCCGU-CACGc -5'
28152 3' -64.5 NC_005887.1 + 538 0.66 0.249217
Target:  5'- uCGgCCGCcgcgCGCCGcGCCGGauaCAGcGCGa -3'
miRNA:   3'- -GCgGGCGua--GCGGC-CGGCC---GUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 40264 0.66 0.249217
Target:  5'- uGUUCGUGcugcCGCUGGCCGGCaagucGGUGCc -3'
miRNA:   3'- gCGGGCGUa---GCGGCCGGCCG-----UCACGc -5'
28152 3' -64.5 NC_005887.1 + 11706 0.66 0.249217
Target:  5'- gCGUCUGCAacgCGUCGaGCuCGGCAuUGCGc -3'
miRNA:   3'- -GCGGGCGUa--GCGGC-CG-GCCGUcACGC- -5'
28152 3' -64.5 NC_005887.1 + 29566 0.66 0.249217
Target:  5'- gCGCCCGcCGUCgagGCC-GCCGGCuacgacaucGUGCu -3'
miRNA:   3'- -GCGGGC-GUAG---CGGcCGGCCGu--------CACGc -5'
28152 3' -64.5 NC_005887.1 + 2779 0.66 0.249217
Target:  5'- aGUCCGuCGUCGCgCGGCuCGGCcgcuUGCc -3'
miRNA:   3'- gCGGGC-GUAGCG-GCCG-GCCGuc--ACGc -5'
28152 3' -64.5 NC_005887.1 + 36422 0.66 0.243113
Target:  5'- gCGCaCCGCcuucCGCgCGGCCGGCuucuUGCc -3'
miRNA:   3'- -GCG-GGCGua--GCG-GCCGGCCGuc--ACGc -5'
28152 3' -64.5 NC_005887.1 + 26915 0.66 0.243113
Target:  5'- gCGCCCGaGUCGCUGGCC-GCcGU-CGa -3'
miRNA:   3'- -GCGGGCgUAGCGGCCGGcCGuCAcGC- -5'
28152 3' -64.5 NC_005887.1 + 27763 0.66 0.243113
Target:  5'- uGCCgaGCG-CGCCGGCgaGGUAGaGCGc -3'
miRNA:   3'- gCGGg-CGUaGCGGCCGg-CCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 26568 0.66 0.243113
Target:  5'- gCGCUCGaggaaAUCGUcgaggaagCGGCCGGCAugcccGUGCu -3'
miRNA:   3'- -GCGGGCg----UAGCG--------GCCGGCCGU-----CACGc -5'
28152 3' -64.5 NC_005887.1 + 16473 0.66 0.243113
Target:  5'- uCGgCCGCGUgagcuuCCGGCCGGCGGccgucucgacUGCa -3'
miRNA:   3'- -GCgGGCGUAgc----GGCCGGCCGUC----------ACGc -5'
28152 3' -64.5 NC_005887.1 + 5581 0.66 0.243113
Target:  5'- uGCCUGCugcgGCCGGUgcugCGGCcGGUGCu -3'
miRNA:   3'- gCGGGCGuag-CGGCCG----GCCG-UCACGc -5'
28152 3' -64.5 NC_005887.1 + 28478 0.66 0.243113
Target:  5'- gCGCCUGCGcgCGCuCGGCU-GCGacGUGCGc -3'
miRNA:   3'- -GCGGGCGUa-GCG-GCCGGcCGU--CACGC- -5'
28152 3' -64.5 NC_005887.1 + 21343 0.66 0.237134
Target:  5'- aCGCCagcagCGCAUaCGCC-GCCGccGCGGUGCc -3'
miRNA:   3'- -GCGG-----GCGUA-GCGGcCGGC--CGUCACGc -5'
28152 3' -64.5 NC_005887.1 + 3033 0.66 0.231279
Target:  5'- aCGgaCGUggaGUCGCCGGCgaggauggucgCGGCGGUGCc -3'
miRNA:   3'- -GCggGCG---UAGCGGCCG-----------GCCGUCACGc -5'
28152 3' -64.5 NC_005887.1 + 34944 0.66 0.231279
Target:  5'- uCGCCgGCuUCGaacuCGGCgGGC-GUGCGc -3'
miRNA:   3'- -GCGGgCGuAGCg---GCCGgCCGuCACGC- -5'
28152 3' -64.5 NC_005887.1 + 3267 0.66 0.230701
Target:  5'- gCGCUCGCGgcccuucUCGCUguccgGGCgCGGCAGcUGCc -3'
miRNA:   3'- -GCGGGCGU-------AGCGG-----CCG-GCCGUC-ACGc -5'
28152 3' -64.5 NC_005887.1 + 10909 0.66 0.225547
Target:  5'- aGCCggCGCAgaugaCGUCGGCCGGCc-UGCu -3'
miRNA:   3'- gCGG--GCGUa----GCGGCCGGCCGucACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.