miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28159 5' -63.7 NC_005887.1 + 11114 0.66 0.281717
Target:  5'- gUGCGCgCGAa--GCUGGCCgaggcGCCGUgGc -3'
miRNA:   3'- -ACGCGgGCUcagCGACCGG-----CGGCAgC- -5'
28159 5' -63.7 NC_005887.1 + 4617 0.66 0.274949
Target:  5'- aUGCucGCCgCGGcGcCGgUGGCCGCCGgcgCGa -3'
miRNA:   3'- -ACG--CGG-GCU-CaGCgACCGGCGGCa--GC- -5'
28159 5' -63.7 NC_005887.1 + 20834 0.66 0.274949
Target:  5'- uUGCGCCaCGuGUCGCaacGuuGCCGgcgCGu -3'
miRNA:   3'- -ACGCGG-GCuCAGCGac-CggCGGCa--GC- -5'
28159 5' -63.7 NC_005887.1 + 26790 0.66 0.270951
Target:  5'- gUGCGCCCG-GUcuaugucgagcugccCGC-GGCCGCgCGaCGg -3'
miRNA:   3'- -ACGCGGGCuCA---------------GCGaCCGGCG-GCaGC- -5'
28159 5' -63.7 NC_005887.1 + 35051 0.66 0.268312
Target:  5'- gGUuaCgCGAgGUCGCU-GCCGUCGUCGg -3'
miRNA:   3'- aCGcgG-GCU-CAGCGAcCGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 41601 0.66 0.268312
Target:  5'- gUGCGCgCCGAGcgccUCGCggaucuuGCCGagcaCCGUCGa -3'
miRNA:   3'- -ACGCG-GGCUC----AGCGac-----CGGC----GGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 24958 0.66 0.268312
Target:  5'- cUGCGaagaagaCCGAGcgCGCggcaucGGCCGCCGcCu -3'
miRNA:   3'- -ACGCg------GGCUCa-GCGa-----CCGGCGGCaGc -5'
28159 5' -63.7 NC_005887.1 + 18464 0.66 0.266347
Target:  5'- gGCGCCgcggcguaggccauCGGGuUCGCgagcgccGGCgCGCCGUCu -3'
miRNA:   3'- aCGCGG--------------GCUC-AGCGa------CCG-GCGGCAGc -5'
28159 5' -63.7 NC_005887.1 + 30500 0.66 0.261805
Target:  5'- uUGCGCaCCGcaaaacugcaucAGccCGCguaGGCgGCCGUCGg -3'
miRNA:   3'- -ACGCG-GGC------------UCa-GCGa--CCGgCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 14497 0.66 0.259878
Target:  5'- cGUGCCCGccgcggugcuugguGGUcCGCUugcaGGCgCGgCCGUCGg -3'
miRNA:   3'- aCGCGGGC--------------UCA-GCGA----CCG-GC-GGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 2572 0.66 0.255427
Target:  5'- gGCaGUCCGGGUgcacgaGCaggccgGGCuCGCCGUCGa -3'
miRNA:   3'- aCG-CGGGCUCAg-----CGa-----CCG-GCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 13517 0.66 0.249177
Target:  5'- cGCGCCCGucAGgaugaacgUGCUGagcggugcGCCGCuCGUCGc -3'
miRNA:   3'- aCGCGGGC--UCa-------GCGAC--------CGGCG-GCAGC- -5'
28159 5' -63.7 NC_005887.1 + 19027 0.67 0.245489
Target:  5'- cGUGCCCu--UCGCagaaucgugcguuauUGGCCGCCGaCGg -3'
miRNA:   3'- aCGCGGGcucAGCG---------------ACCGGCGGCaGC- -5'
28159 5' -63.7 NC_005887.1 + 31313 0.67 0.243054
Target:  5'- gGCGCaCCGguGGUCacgucccacguGCcgaccgGGCCGUCGUCGa -3'
miRNA:   3'- aCGCG-GGC--UCAG-----------CGa-----CCGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 39800 0.67 0.239441
Target:  5'- uUGCGCgCGucGUCacuucgcacuGCUggauaaagcgcgacgGGCCGCCGUCGc -3'
miRNA:   3'- -ACGCGgGCu-CAG----------CGA---------------CCGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 23308 0.67 0.237057
Target:  5'- uUGCGCgCCGAccgccGcCGCUcGCgUGCCGUCGg -3'
miRNA:   3'- -ACGCG-GGCU-----CaGCGAcCG-GCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 15943 0.67 0.237057
Target:  5'- aGCGCaCCGAGcUGCUGGUgCGCCu--- -3'
miRNA:   3'- aCGCG-GGCUCaGCGACCG-GCGGcagc -5'
28159 5' -63.7 NC_005887.1 + 24037 0.67 0.237057
Target:  5'- cGCGCUCGAG-CaGUgGGCCGagguCGUCGg -3'
miRNA:   3'- aCGCGGGCUCaG-CGaCCGGCg---GCAGC- -5'
28159 5' -63.7 NC_005887.1 + 34482 0.67 0.231184
Target:  5'- cGCGCCCGAGaaGCUGucGCCcggaCCGUgGu -3'
miRNA:   3'- aCGCGGGCUCagCGAC--CGGc---GGCAgC- -5'
28159 5' -63.7 NC_005887.1 + 14145 0.67 0.225434
Target:  5'- aUGUGCCCGAGcCGaC-GGUCuauCCGUCGa -3'
miRNA:   3'- -ACGCGGGCUCaGC-GaCCGGc--GGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.