miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28160 5' -58.1 NC_005887.1 + 30104 0.66 0.532806
Target:  5'- -gGCGCUCGcCUaugagGGUgGCGUCGGCg- -3'
miRNA:   3'- agCGUGAGCaGG-----CCGgUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 6928 0.66 0.511883
Target:  5'- cCGCaACUCGgcaUgGGCCGCGcCGuCUGg -3'
miRNA:   3'- aGCG-UGAGCa--GgCCGGUGCaGCuGAC- -5'
28160 5' -58.1 NC_005887.1 + 30617 0.66 0.491308
Target:  5'- cUCGCGCagcgCGUCCGGCagauccggauCGUUGAUg- -3'
miRNA:   3'- -AGCGUGa---GCAGGCCGgu--------GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 27086 0.66 0.491308
Target:  5'- cCGCGCUUGcugcgCUGGUucgacacgCGCGUCGACUu -3'
miRNA:   3'- aGCGUGAGCa----GGCCG--------GUGCAGCUGAc -5'
28160 5' -58.1 NC_005887.1 + 12344 0.66 0.491308
Target:  5'- aCGuCGCUCG-CCGGCCAgGcggUGACg- -3'
miRNA:   3'- aGC-GUGAGCaGGCCGGUgCa--GCUGac -5'
28160 5' -58.1 NC_005887.1 + 27254 0.67 0.471125
Target:  5'- aUCGCGCg---CCGGcCCGCGUCGcCa- -3'
miRNA:   3'- -AGCGUGagcaGGCC-GGUGCAGCuGac -5'
28160 5' -58.1 NC_005887.1 + 29419 0.67 0.471125
Target:  5'- cUCGacaGCUCGU-CGGCCGaguaguCGUCGGCg- -3'
miRNA:   3'- -AGCg--UGAGCAgGCCGGU------GCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 35817 0.67 0.461192
Target:  5'- aCGCGCuguguuccUCGUgC-GCCGCGUCGGCg- -3'
miRNA:   3'- aGCGUG--------AGCAgGcCGGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 41748 0.67 0.45137
Target:  5'- cUCGCGCagcucgcuaccuUCGUCCGGCUcgccaACGUaGACg- -3'
miRNA:   3'- -AGCGUG------------AGCAGGCCGG-----UGCAgCUGac -5'
28160 5' -58.1 NC_005887.1 + 41978 0.67 0.448446
Target:  5'- gCGCGCUCGccuaUCagcagcacggccugCGGcCCACGUCGAgUGu -3'
miRNA:   3'- aGCGUGAGC----AG--------------GCC-GGUGCAGCUgAC- -5'
28160 5' -58.1 NC_005887.1 + 33563 0.67 0.447474
Target:  5'- aUCGCGCggaugcugaacggCGaUCCGGaUUACGUCGACa- -3'
miRNA:   3'- -AGCGUGa------------GC-AGGCC-GGUGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 21401 0.67 0.441665
Target:  5'- gUCGUGUUCGUaCCGGCCGaugcgGUCGGCg- -3'
miRNA:   3'- -AGCGUGAGCA-GGCCGGUg----CAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 26913 0.67 0.422615
Target:  5'- cUGCGCccgagUCG-CUGGCCGCcGUCGACg- -3'
miRNA:   3'- aGCGUG-----AGCaGGCCGGUG-CAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 17435 0.68 0.404067
Target:  5'- aUCGCGCUCGUCgagcgcuaCGGCC-CGaaucCGACg- -3'
miRNA:   3'- -AGCGUGAGCAG--------GCCGGuGCa---GCUGac -5'
28160 5' -58.1 NC_005887.1 + 27216 0.68 0.394988
Target:  5'- cCGCGCccguggcCGUUCGGCCGCGUgaucgcCGACg- -3'
miRNA:   3'- aGCGUGa------GCAGGCCGGUGCA------GCUGac -5'
28160 5' -58.1 NC_005887.1 + 9324 0.69 0.368555
Target:  5'- aCGCACaCGUCCGGUa--GUCGAUg- -3'
miRNA:   3'- aGCGUGaGCAGGCCGgugCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 36285 0.69 0.36598
Target:  5'- cUCGCucgACUCGUCCGGUUggccgaucugcgcgGCgGUCGACg- -3'
miRNA:   3'- -AGCG---UGAGCAGGCCGG--------------UG-CAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 16467 0.69 0.349128
Target:  5'- aUGCGCUCGaccgcgcggcaggaUCCGGCgggCugGUCGGCg- -3'
miRNA:   3'- aGCGUGAGC--------------AGGCCG---GugCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 23578 0.69 0.343362
Target:  5'- cCGCGCguUCGUCagcgCGGCCgaacACGUCGGCa- -3'
miRNA:   3'- aGCGUG--AGCAG----GCCGG----UGCAGCUGac -5'
28160 5' -58.1 NC_005887.1 + 4252 0.69 0.343362
Target:  5'- -aGCACUUcgGUCgCGGUCAUGUCGccGCUGu -3'
miRNA:   3'- agCGUGAG--CAG-GCCGGUGCAGC--UGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.