Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28161 | 5' | -57.4 | NC_005887.1 | + | 23118 | 0.71 | 0.282455 |
Target: 5'- aCCcgGCUccuggcagacuGGCCCAUACGUUCGAuaccuuCGCc -3' miRNA: 3'- -GGuaCGG-----------CCGGGUGUGCAAGCUc-----GCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 15044 | 0.71 | 0.296907 |
Target: 5'- gCC-UGCgCGGCCUGCGCGgcguaggcgUCGAGuUGCg -3' miRNA: 3'- -GGuACG-GCCGGGUGUGCa--------AGCUC-GCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 39956 | 0.71 | 0.282455 |
Target: 5'- gUAUGCUGGUCCACcauucACGUgaugcgCGAGgCGCu -3' miRNA: 3'- gGUACGGCCGGGUG-----UGCAa-----GCUC-GCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 14218 | 0.71 | 0.282455 |
Target: 5'- aCAgGgCGGCgCCGCGCuGUUCG-GCGCg -3' miRNA: 3'- gGUaCgGCCG-GGUGUG-CAAGCuCGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 27080 | 0.71 | 0.28961 |
Target: 5'- uCgGUGCCGcGCUugcugCGCugGUUCGAcacGCGCg -3' miRNA: 3'- -GgUACGGC-CGG-----GUGugCAAGCU---CGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 23974 | 0.71 | 0.296907 |
Target: 5'- ----cUCGGCCCAC-UGcUCGAGCGCg -3' miRNA: 3'- gguacGGCCGGGUGuGCaAGCUCGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 17267 | 0.71 | 0.296907 |
Target: 5'- aUCGUGCCGGgCgAgACG-UCGGGCGg -3' miRNA: 3'- -GGUACGGCCgGgUgUGCaAGCUCGCg -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 36400 | 0.7 | 0.319652 |
Target: 5'- ---cGUCGGCCUAUACcuggaUCGAGUGCg -3' miRNA: 3'- gguaCGGCCGGGUGUGca---AGCUCGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 21395 | 0.7 | 0.35197 |
Target: 5'- uUCGUaCCGGCCgAUGCGgUCG-GCGCg -3' miRNA: 3'- -GGUAcGGCCGGgUGUGCaAGCuCGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 1560 | 0.7 | 0.35197 |
Target: 5'- ---cGCaCGGCCgCGC-CGcgCGAGCGCc -3' miRNA: 3'- gguaCG-GCCGG-GUGuGCaaGCUCGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 35433 | 0.7 | 0.311928 |
Target: 5'- gCUGUGCaGGCCCGCGUGgugcCGGGCGUg -3' miRNA: 3'- -GGUACGgCCGGGUGUGCaa--GCUCGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 3162 | 0.7 | 0.35197 |
Target: 5'- -gAUGCCGcGCCUcgACAaGUUCGGGCaGCu -3' miRNA: 3'- ggUACGGC-CGGG--UGUgCAAGCUCG-CG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 12965 | 0.7 | 0.342856 |
Target: 5'- gCGUGCUGGCUCGC-CGUgcCGAucagcucGCGCa -3' miRNA: 3'- gGUACGGCCGGGUGuGCAa-GCU-------CGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 29606 | 0.7 | 0.319652 |
Target: 5'- cCUGUGCCaGGCCguCGCGcgCGAcGUGCu -3' miRNA: 3'- -GGUACGG-CCGGguGUGCaaGCU-CGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 24250 | 0.7 | 0.35197 |
Target: 5'- aCGUGCCGGCagcagCCACGgCGagUCGccggauAGCGCg -3' miRNA: 3'- gGUACGGCCG-----GGUGU-GCa-AGC------UCGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 37980 | 0.7 | 0.317319 |
Target: 5'- gCC-UGCUGGggcauggaaaacgaCCCAC-CGcUUCGAGCGCu -3' miRNA: 3'- -GGuACGGCC--------------GGGUGuGC-AAGCUCGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 30867 | 0.69 | 0.377689 |
Target: 5'- ---cGCUGGUCCugAUGccaGAGCGCg -3' miRNA: 3'- gguaCGGCCGGGugUGCaagCUCGCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 14362 | 0.69 | 0.377689 |
Target: 5'- gCGUGCCGGgC-ACcUGUUCGAGuCGCc -3' miRNA: 3'- gGUACGGCCgGgUGuGCAAGCUC-GCG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 34657 | 0.69 | 0.377689 |
Target: 5'- gCCGgcuUGCCGGUuuccggauCCGcCACGUugUCGAGCaGCa -3' miRNA: 3'- -GGU---ACGGCCG--------GGU-GUGCA--AGCUCG-CG- -5' |
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28161 | 5' | -57.4 | NC_005887.1 | + | 33754 | 0.69 | 0.395523 |
Target: 5'- ---cGCCGGCCUuCACGagcaUCuGGCGCg -3' miRNA: 3'- gguaCGGCCGGGuGUGCa---AGcUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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