miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28162 3' -57.3 NC_005887.1 + 41661 0.7 0.289399
Target:  5'- gGCC-GCcGCACCUgggccgcCGCugGCCGACa- -3'
miRNA:   3'- -UGGaCGuUGUGGA-------GCGugCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 41604 0.66 0.490921
Target:  5'- cGCgUGCGcgccgaGCGCCUCGCGgaucuugccgagcacCGUCGACUu -3'
miRNA:   3'- -UGgACGU------UGUGGAGCGU---------------GCGGCUGAc -5'
28162 3' -57.3 NC_005887.1 + 40933 0.71 0.242127
Target:  5'- cACCgaguucgGCAACGCCgagCGCAUGCuCGACc- -3'
miRNA:   3'- -UGGa------CGUUGUGGa--GCGUGCG-GCUGac -5'
28162 3' -57.3 NC_005887.1 + 40671 0.71 0.241491
Target:  5'- gGCC-GCAccauccuGCACCUggcgCGCGCGCaCGGCUGg -3'
miRNA:   3'- -UGGaCGU-------UGUGGA----GCGUGCG-GCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 39471 0.66 0.497182
Target:  5'- uGCCUGaaaAGCGCgUguugcCGCugGCCaGGCUGa -3'
miRNA:   3'- -UGGACg--UUGUGgA-----GCGugCGG-CUGAC- -5'
28162 3' -57.3 NC_005887.1 + 36102 0.69 0.336972
Target:  5'- gGCCUu--GCGCCUCGCcgGCGCCGAg-- -3'
miRNA:   3'- -UGGAcguUGUGGAGCG--UGCGGCUgac -5'
28162 3' -57.3 NC_005887.1 + 36057 0.67 0.456168
Target:  5'- gGCCU-CGACGCgCUCGCgcACGCCGuCg- -3'
miRNA:   3'- -UGGAcGUUGUG-GAGCG--UGCGGCuGac -5'
28162 3' -57.3 NC_005887.1 + 36021 0.71 0.268698
Target:  5'- aACCaGCAGCgucACCUCG-GCGCCGGCg- -3'
miRNA:   3'- -UGGaCGUUG---UGGAGCgUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 35380 0.66 0.507697
Target:  5'- gGCCUGCAGCAgCUCauGCucgauGCGCCcGCg- -3'
miRNA:   3'- -UGGACGUUGUgGAG--CG-----UGCGGcUGac -5'
28162 3' -57.3 NC_005887.1 + 35020 0.66 0.518304
Target:  5'- aACCUGCGcACGCC-CGCcgaguucgaaGCCGGCg- -3'
miRNA:   3'- -UGGACGU-UGUGGaGCGug--------CGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 33868 0.7 0.297573
Target:  5'- aGCCUGCGGCAgCCgacagCGCuccguCGCCGuAUUGg -3'
miRNA:   3'- -UGGACGUUGU-GGa----GCGu----GCGGC-UGAC- -5'
28162 3' -57.3 NC_005887.1 + 32826 0.71 0.261842
Target:  5'- aGCCgGCuGCAUggCGCGCGCCGGCg- -3'
miRNA:   3'- -UGGaCGuUGUGgaGCGUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 32743 0.67 0.426634
Target:  5'- ---cGCGGCGCUcgcgUGCGCGCCGGCg- -3'
miRNA:   3'- uggaCGUUGUGGa---GCGUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 32394 0.69 0.365863
Target:  5'- cGCCgGCAucggcgugugguccuACGCaCUgCgGCGCGCCGGCUGg -3'
miRNA:   3'- -UGGaCGU---------------UGUG-GA-G-CGUGCGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 32270 0.67 0.436353
Target:  5'- gACgaGCGGCACCU--CugGCCGcACUGg -3'
miRNA:   3'- -UGgaCGUUGUGGAgcGugCGGC-UGAC- -5'
28162 3' -57.3 NC_005887.1 + 31733 0.72 0.229681
Target:  5'- uGCCUGCugcaAACGCUUCGCuGCGCCccGugUGa -3'
miRNA:   3'- -UGGACG----UUGUGGAGCG-UGCGG--CugAC- -5'
28162 3' -57.3 NC_005887.1 + 29906 0.72 0.21778
Target:  5'- cGCCUGCGACAuCCUCaaACGCCu-CUGg -3'
miRNA:   3'- -UGGACGUUGU-GGAGcgUGCGGcuGAC- -5'
28162 3' -57.3 NC_005887.1 + 29808 0.69 0.362377
Target:  5'- cGCCggGCAAgACCgUGCACGCgCGGCg- -3'
miRNA:   3'- -UGGa-CGUUgUGGaGCGUGCG-GCUGac -5'
28162 3' -57.3 NC_005887.1 + 29373 0.66 0.507697
Target:  5'- cGCgaGCGGCAugcCCUCGgccCAUGCCGGCg- -3'
miRNA:   3'- -UGgaCGUUGU---GGAGC---GUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 28489 0.75 0.140427
Target:  5'- cGCgaGCAcgaGCGCCUgCGCGCGCuCGGCUGc -3'
miRNA:   3'- -UGgaCGU---UGUGGA-GCGUGCG-GCUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.