miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 3' -54.7 NC_005887.1 + 15483 0.66 0.663962
Target:  5'- --cGCgUUCGAGCugGccGCGCGUCaGAUg -3'
miRNA:   3'- aacCG-AAGCUCGugCu-UGCGCAG-CUG- -5'
28163 3' -54.7 NC_005887.1 + 1689 0.66 0.663962
Target:  5'- --cGCccCGAGCACGAGCGCaagcugcgCGGCa -3'
miRNA:   3'- aacCGaaGCUCGUGCUUGCGca------GCUG- -5'
28163 3' -54.7 NC_005887.1 + 27100 0.66 0.663962
Target:  5'- cUGG-UUCGA-CAC--GCGCGUCGACu -3'
miRNA:   3'- aACCgAAGCUcGUGcuUGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 35467 0.66 0.663962
Target:  5'- -gGGCgaaggcCGuGCGCGGGCGCaUCGAg -3'
miRNA:   3'- aaCCGaa----GCuCGUGCUUGCGcAGCUg -5'
28163 3' -54.7 NC_005887.1 + 5652 0.66 0.66283
Target:  5'- cUUGGCcUCGAcgaacugGCGCaGGucaGCGUCGGCg -3'
miRNA:   3'- -AACCGaAGCU-------CGUG-CUug-CGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 31452 0.66 0.652629
Target:  5'- -cGGCacgcacCGcuAGC-CGAGCGCGUCGAg -3'
miRNA:   3'- aaCCGaa----GC--UCGuGCUUGCGCAGCUg -5'
28163 3' -54.7 NC_005887.1 + 1832 0.66 0.652629
Target:  5'- -cGGCaucUUCGGcGaCACGAACGCGcCGGa -3'
miRNA:   3'- aaCCG---AAGCU-C-GUGCUUGCGCaGCUg -5'
28163 3' -54.7 NC_005887.1 + 31221 0.66 0.641277
Target:  5'- -cGuGCUUC-AGCACGA-CGCGaUCGAa -3'
miRNA:   3'- aaC-CGAAGcUCGUGCUuGCGC-AGCUg -5'
28163 3' -54.7 NC_005887.1 + 32738 0.66 0.641277
Target:  5'- -cGGUUgcCGaAGCGCGcACGCG-CGACa -3'
miRNA:   3'- aaCCGAa-GC-UCGUGCuUGCGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 12904 0.66 0.634461
Target:  5'- -cGGCacggCGAGCcagcacgccgguuucGCGAGCGCGUCc-- -3'
miRNA:   3'- aaCCGaa--GCUCG---------------UGCUUGCGCAGcug -5'
28163 3' -54.7 NC_005887.1 + 8950 0.66 0.629916
Target:  5'- -aGGUccgCGAGCGCGuACGgCGUCG-Cg -3'
miRNA:   3'- aaCCGaa-GCUCGUGCuUGC-GCAGCuG- -5'
28163 3' -54.7 NC_005887.1 + 496 0.66 0.629916
Target:  5'- -aGGgUUCGAGCgcagcaacaGCGGGCgGCG-CGGCg -3'
miRNA:   3'- aaCCgAAGCUCG---------UGCUUG-CGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 17681 0.66 0.629916
Target:  5'- cUUGGCgacgUCG-GCACGAuguuCGUGaCGGCc -3'
miRNA:   3'- -AACCGa---AGCuCGUGCUu---GCGCaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 37140 0.66 0.629916
Target:  5'- --cGCUUCG-GUGCGAACGcCGUCaGCg -3'
miRNA:   3'- aacCGAAGCuCGUGCUUGC-GCAGcUG- -5'
28163 3' -54.7 NC_005887.1 + 10273 0.66 0.618557
Target:  5'- -cGGCg-CGGGCAUcGACGCGacgcacUCGACg -3'
miRNA:   3'- aaCCGaaGCUCGUGcUUGCGC------AGCUG- -5'
28163 3' -54.7 NC_005887.1 + 32197 0.66 0.618557
Target:  5'- -aGGUUgCGAGCA---GCGCuGUCGACg -3'
miRNA:   3'- aaCCGAaGCUCGUgcuUGCG-CAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 34814 0.66 0.618557
Target:  5'- --aGCuUUCGAGCAU---CGCGUCGGCc -3'
miRNA:   3'- aacCG-AAGCUCGUGcuuGCGCAGCUG- -5'
28163 3' -54.7 NC_005887.1 + 26106 0.66 0.618557
Target:  5'- aUGGCgUCGAGCAgGAuguccugcacgGCGCGcuucguuucgCGGCg -3'
miRNA:   3'- aACCGaAGCUCGUgCU-----------UGCGCa---------GCUG- -5'
28163 3' -54.7 NC_005887.1 + 6130 0.67 0.607211
Target:  5'- aUGGCUacUCuGAGCACGAACaaccCGACg -3'
miRNA:   3'- aACCGA--AG-CUCGUGCUUGcgcaGCUG- -5'
28163 3' -54.7 NC_005887.1 + 17172 0.67 0.607211
Target:  5'- -aGGCguggGAGCgcGCGAACGCGgccgcacgCGGCa -3'
miRNA:   3'- aaCCGaag-CUCG--UGCUUGCGCa-------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.