miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 5' -58 NC_005887.1 + 2486 0.66 0.523398
Target:  5'- -cAUUCGUCGG-CGCGggcuUCGCCUc -3'
miRNA:   3'- caUGAGCAGCCgGCGCagcuAGCGGA- -5'
28168 5' -58 NC_005887.1 + 827 0.66 0.523398
Target:  5'- aUGCUCGcgcgaucgCGGCCGCGaaGAaaGCCa -3'
miRNA:   3'- cAUGAGCa-------GCCGGCGCagCUagCGGa -5'
28168 5' -58 NC_005887.1 + 41955 0.66 0.523398
Target:  5'- cGUGCUCGcgUGGUgcgugCGCGgcgCGcUCGCCUa -3'
miRNA:   3'- -CAUGAGCa-GCCG-----GCGCa--GCuAGCGGA- -5'
28168 5' -58 NC_005887.1 + 35225 0.66 0.523398
Target:  5'- -aGCUUGUCGGCCuGCGUgGGgcugaugaGCUUg -3'
miRNA:   3'- caUGAGCAGCCGG-CGCAgCUag------CGGA- -5'
28168 5' -58 NC_005887.1 + 14609 0.66 0.523398
Target:  5'- cGUACggcCGUCGGCgC-CGUCGAgggCGCgCUc -3'
miRNA:   3'- -CAUGa--GCAGCCG-GcGCAGCUa--GCG-GA- -5'
28168 5' -58 NC_005887.1 + 15967 0.66 0.523398
Target:  5'- -cGCagGUCGGCCagcugcGCGUCGAgCGCa- -3'
miRNA:   3'- caUGagCAGCCGG------CGCAGCUaGCGga -5'
28168 5' -58 NC_005887.1 + 14697 0.66 0.520249
Target:  5'- -gGCUCGUcgcggcgggcgggcCGGgCGCGgCGAUCGCg- -3'
miRNA:   3'- caUGAGCA--------------GCCgGCGCaGCUAGCGga -5'
28168 5' -58 NC_005887.1 + 11786 0.66 0.512932
Target:  5'- cGUcCUCGcugcUCGGCgGCGUCGGUucguaCGCUa -3'
miRNA:   3'- -CAuGAGC----AGCCGgCGCAGCUA-----GCGGa -5'
28168 5' -58 NC_005887.1 + 5502 0.66 0.48208
Target:  5'- aGUGCcagCGggcgcgUGGUCGCGcCGGUCGCUg -3'
miRNA:   3'- -CAUGa--GCa-----GCCGGCGCaGCUAGCGGa -5'
28168 5' -58 NC_005887.1 + 40735 0.66 0.48208
Target:  5'- -aGgUCGcCGcCCGCGUCGAggcgaUCGCCg -3'
miRNA:   3'- caUgAGCaGCcGGCGCAGCU-----AGCGGa -5'
28168 5' -58 NC_005887.1 + 31336 0.67 0.471996
Target:  5'- cGUGC-CGaccgGGCCGuCGUCGAUgGCCc -3'
miRNA:   3'- -CAUGaGCag--CCGGC-GCAGCUAgCGGa -5'
28168 5' -58 NC_005887.1 + 10198 0.67 0.471996
Target:  5'- --uUUCGUCGagugcGUCGCGUCGAUgcccgCGCCg -3'
miRNA:   3'- cauGAGCAGC-----CGGCGCAGCUA-----GCGGa -5'
28168 5' -58 NC_005887.1 + 36133 0.67 0.462019
Target:  5'- uGUACaUCGaCGGCgugcgcgagCGCGUCGAggccuugCGCCUc -3'
miRNA:   3'- -CAUG-AGCaGCCG---------GCGCAGCUa------GCGGA- -5'
28168 5' -58 NC_005887.1 + 22773 0.67 0.462019
Target:  5'- cGUGCUCGUUGGCUcgacgccgGCG-CGGcCGCUg -3'
miRNA:   3'- -CAUGAGCAGCCGG--------CGCaGCUaGCGGa -5'
28168 5' -58 NC_005887.1 + 30091 0.67 0.462019
Target:  5'- uGUACUUGUCGaCCGCuUCGAcggcuaCGCCg -3'
miRNA:   3'- -CAUGAGCAGCcGGCGcAGCUa-----GCGGa -5'
28168 5' -58 NC_005887.1 + 33912 0.67 0.452154
Target:  5'- -gGCUCGUaCGcccuGCaUGCGuUCGAUCGCCg -3'
miRNA:   3'- caUGAGCA-GC----CG-GCGC-AGCUAGCGGa -5'
28168 5' -58 NC_005887.1 + 13696 0.67 0.452154
Target:  5'- cUGCUCGgcugagugCGGCCGC--CGcgCGCCg -3'
miRNA:   3'- cAUGAGCa-------GCCGGCGcaGCuaGCGGa -5'
28168 5' -58 NC_005887.1 + 21629 0.67 0.442406
Target:  5'- aGUACUgGaUGGCguaauUGCGcCGGUCGCCUg -3'
miRNA:   3'- -CAUGAgCaGCCG-----GCGCaGCUAGCGGA- -5'
28168 5' -58 NC_005887.1 + 40527 0.67 0.441437
Target:  5'- -aGCUCGUCGacGCCGgcauucgggaucaUGUCGAgCGCCg -3'
miRNA:   3'- caUGAGCAGC--CGGC-------------GCAGCUaGCGGa -5'
28168 5' -58 NC_005887.1 + 2036 0.67 0.423271
Target:  5'- gGUugUCGauguucUCGGCCGCcggGUucacgacccacCGAUCGCCg -3'
miRNA:   3'- -CAugAGC------AGCCGGCG---CA-----------GCUAGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.