Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28174 | 5' | -56.9 | NC_005887.1 | + | 33975 | 0.66 | 0.524039 |
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Target: 5'- --cGUCCGUCAGCaccggCGCCGUaUCa -3' miRNA: 3'- gaaCGGGCGGUCGguaa-GCGGCA-AGc -5' |
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| 28174 | 5' | -56.9 | NC_005887.1 | + | 34099 | 0.66 | 0.534754 |
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Target: 5'- --aGCCUGCauauCGGUCAggaugUUGCCGUUCu -3' miRNA: 3'- gaaCGGGCG----GUCGGUa----AGCGGCAAGc -5' |
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| 28174 | 5' | -56.9 | NC_005887.1 | + | 9927 | 0.66 | 0.534754 |
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Target: 5'- --cG-CCGCCGGCCAcaUCGCCGccggccacgUCGa -3' miRNA: 3'- gaaCgGGCGGUCGGUa-AGCGGCa--------AGC- -5' |
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| 28174 | 5' | -56.9 | NC_005887.1 | + | 8106 | 0.66 | 0.545546 |
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Target: 5'- --aGCUCGCCGcgcucGCCGaggcgcCGCUGUUCGg -3' miRNA: 3'- gaaCGGGCGGU-----CGGUaa----GCGGCAAGC- -5' |
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| 28174 | 5' | -56.9 | NC_005887.1 | + | 26849 | 0.66 | 0.545546 |
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Target: 5'- --cGUCUGCCgguAGCCGUUgcCGCCGggCa -3' miRNA: 3'- gaaCGGGCGG---UCGGUAA--GCGGCaaGc -5' |
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| 28174 | 5' | -56.9 | NC_005887.1 | + | 25650 | 0.66 | 0.545546 |
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Target: 5'- gUUGagcuucaCCGCCAGCCGcagcgcgUCGCCaucgUCGg -3' miRNA: 3'- gAACg------GGCGGUCGGUa------AGCGGca--AGC- -5' |
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| 28174 | 5' | -56.9 | NC_005887.1 | + | 27256 | 0.66 | 0.556407 |
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Target: 5'- --cGCgCGCCGGCCcgcgUCGCCaaugaUCGg -3' miRNA: 3'- gaaCGgGCGGUCGGua--AGCGGca---AGC- -5' |
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| 28174 | 5' | -56.9 | NC_005887.1 | + | 4617 | 0.66 | 0.567329 |
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Target: 5'- -aUGCUCGCCGcggcGCCGguggcCGCCGgcgCGa -3' miRNA: 3'- gaACGGGCGGU----CGGUaa---GCGGCaa-GC- -5' |
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| 28174 | 5' | -56.9 | NC_005887.1 | + | 39035 | 0.66 | 0.571713 |
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Target: 5'- gUUGCCCGUcuuCAGCCGaugccagagcugcgUCGCCGgcgUGa -3' miRNA: 3'- gAACGGGCG---GUCGGUa-------------AGCGGCaa-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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