Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28177 | 5' | -51.8 | NC_005887.1 | + | 154 | 0.66 | 0.755524 |
Target: 5'- -cGCGCGCAGCaauGCGacGAGCCAgcGCg- -3' miRNA: 3'- guUGCGCGUCG---UGU--UUCGGUacUGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 644 | 0.66 | 0.744445 |
Target: 5'- aAGCGCGCGGCGagcgcacGCgCAUGACc- -3' miRNA: 3'- gUUGCGCGUCGUguuu---CG-GUACUGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 963 | 0.73 | 0.387676 |
Target: 5'- aGGCGUGCAGCACGAGGUgAUcgccGACa- -3' miRNA: 3'- gUUGCGCGUCGUGUUUCGgUA----CUGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 1154 | 0.7 | 0.558704 |
Target: 5'- aCGACGCGCGGguCGGaugcAGCCA-GGCg- -3' miRNA: 3'- -GUUGCGCGUCguGUU----UCGGUaCUGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 1500 | 0.68 | 0.652309 |
Target: 5'- --uCGCGCGGCGC--GGCCGUG-Cg- -3' miRNA: 3'- guuGCGCGUCGUGuuUCGGUACuGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 1592 | 0.68 | 0.640558 |
Target: 5'- gCGGCGCGCGGCGC---GCCAacGGCg- -3' miRNA: 3'- -GUUGCGCGUCGUGuuuCGGUa-CUGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 2093 | 0.67 | 0.698971 |
Target: 5'- cCAGCG-GCAGCACGAacauauugccgaAGCCGUcGCUc -3' miRNA: 3'- -GUUGCgCGUCGUGUU------------UCGGUAcUGAu -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 2215 | 0.67 | 0.721912 |
Target: 5'- gCGGCGCGCAGCGCGcaccgcacGCUGUaGGCg- -3' miRNA: 3'- -GUUGCGCGUCGUGUuu------CGGUA-CUGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 2563 | 0.69 | 0.617041 |
Target: 5'- aCGACGCGCgcaacgaucGGCGCGAGcGCCGcGACc- -3' miRNA: 3'- -GUUGCGCG---------UCGUGUUU-CGGUaCUGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 3021 | 0.71 | 0.480046 |
Target: 5'- cCAGCGcCGCGG-GCAAAGCCAUG-CUc -3' miRNA: 3'- -GUUGC-GCGUCgUGUUUCGGUACuGAu -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 3620 | 0.75 | 0.291832 |
Target: 5'- --cCGCGCAGCGCuucGGCCGUGAa-- -3' miRNA: 3'- guuGCGCGUCGUGuu-UCGGUACUgau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 3633 | 0.7 | 0.524425 |
Target: 5'- gCGAgGCGCAGCACcguAGCCugGUGAUc- -3' miRNA: 3'- -GUUgCGCGUCGUGuu-UCGG--UACUGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 4785 | 0.69 | 0.593585 |
Target: 5'- uGACGC-CAGCcgGCGAGGCCGUG-CUc -3' miRNA: 3'- gUUGCGcGUCG--UGUUUCGGUACuGAu -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 4954 | 0.68 | 0.633502 |
Target: 5'- aGACGCGCAGCucaacucccugaaggACGAGGCCcccaAUGAa-- -3' miRNA: 3'- gUUGCGCGUCG---------------UGUUUCGG----UACUgau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 4959 | 0.66 | 0.741095 |
Target: 5'- gCGAcCGCGCAGCGCcagcugaaggagaaGGAGCCGacGCUGc -3' miRNA: 3'- -GUU-GCGCGUCGUG--------------UUUCGGUacUGAU- -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 5489 | 0.66 | 0.798263 |
Target: 5'- gAugGCGCAGCACc-GGCCGcaGCa- -3' miRNA: 3'- gUugCGCGUCGUGuuUCGGUacUGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 5499 | 0.67 | 0.698971 |
Target: 5'- aGGCGCGCgucgcgauccAGCGCAAGGCUGUcGaACUGc -3' miRNA: 3'- gUUGCGCG----------UCGUGUUUCGGUA-C-UGAU- -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 5721 | 0.66 | 0.798263 |
Target: 5'- aCGACGCGCAGgAgAAGGCgCGcGAUg- -3' miRNA: 3'- -GUUGCGCGUCgUgUUUCG-GUaCUGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 6878 | 0.66 | 0.787842 |
Target: 5'- cCAACGCGCAgGCGCugaucAAGUaCAUGAUc- -3' miRNA: 3'- -GUUGCGCGU-CGUGu----UUCG-GUACUGau -5' |
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28177 | 5' | -51.8 | NC_005887.1 | + | 7032 | 0.68 | 0.652309 |
Target: 5'- gCGGCGCGCGGCAgUGGAGCgAUG-Ca- -3' miRNA: 3'- -GUUGCGCGUCGU-GUUUCGgUACuGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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