miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28177 5' -51.8 NC_005887.1 + 2563 0.69 0.617041
Target:  5'- aCGACGCGCgcaacgaucGGCGCGAGcGCCGcGACc- -3'
miRNA:   3'- -GUUGCGCG---------UCGUGUUU-CGGUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 7991 0.68 0.652309
Target:  5'- -uACGCGgGGCGCucgucuccAGCCGUGGCc- -3'
miRNA:   3'- guUGCGCgUCGUGuu------UCGGUACUGau -5'
28177 5' -51.8 NC_005887.1 + 13958 0.68 0.652309
Target:  5'- gCGACGUGCgcgugacgacAGcCGCGAAGCCGUcGACg- -3'
miRNA:   3'- -GUUGCGCG----------UC-GUGUUUCGGUA-CUGau -5'
28177 5' -51.8 NC_005887.1 + 26235 0.71 0.469236
Target:  5'- -uGCGCGCGGCGCAgcGCCAccgGAa-- -3'
miRNA:   3'- guUGCGCGUCGUGUuuCGGUa--CUgau -5'
28177 5' -51.8 NC_005887.1 + 27705 0.68 0.626446
Target:  5'- gCGACGgGCAGCACcgcgccggcuGCCGUGAg-- -3'
miRNA:   3'- -GUUGCgCGUCGUGuuu-------CGGUACUgau -5'
28177 5' -51.8 NC_005887.1 + 29200 0.68 0.664038
Target:  5'- -cGCGCGCGGCaagcgacgagACGAGGCCcgGcACg- -3'
miRNA:   3'- guUGCGCGUCG----------UGUUUCGGuaC-UGau -5'
28177 5' -51.8 NC_005887.1 + 3633 0.7 0.524425
Target:  5'- gCGAgGCGCAGCACcguAGCCugGUGAUc- -3'
miRNA:   3'- -GUUgCGCGUCGUGuu-UCGG--UACUGau -5'
28177 5' -51.8 NC_005887.1 + 2093 0.67 0.698971
Target:  5'- cCAGCG-GCAGCACGAacauauugccgaAGCCGUcGCUc -3'
miRNA:   3'- -GUUGCgCGUCGUGUU------------UCGGUAcUGAu -5'
28177 5' -51.8 NC_005887.1 + 11296 0.69 0.590077
Target:  5'- aGGCGCGCAGCugAuccagcuguucugcAAGCCGcGGCc- -3'
miRNA:   3'- gUUGCGCGUCGugU--------------UUCGGUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 26402 0.72 0.437582
Target:  5'- gCGGCGUGCGGCGCGuGGCCGgcGCa- -3'
miRNA:   3'- -GUUGCGCGUCGUGUuUCGGUacUGau -5'
28177 5' -51.8 NC_005887.1 + 5499 0.67 0.698971
Target:  5'- aGGCGCGCgucgcgauccAGCGCAAGGCUGUcGaACUGc -3'
miRNA:   3'- gUUGCGCG----------UCGUGUUUCGGUA-C-UGAU- -5'
28177 5' -51.8 NC_005887.1 + 17472 0.68 0.652309
Target:  5'- gAGCGCGCGGCAUc-GGCCGccgccugGACg- -3'
miRNA:   3'- gUUGCGCGUCGUGuuUCGGUa------CUGau -5'
28177 5' -51.8 NC_005887.1 + 7032 0.68 0.652309
Target:  5'- gCGGCGCGCGGCAgUGGAGCgAUG-Ca- -3'
miRNA:   3'- -GUUGCGCGUCGU-GUUUCGgUACuGau -5'
28177 5' -51.8 NC_005887.1 + 18244 0.75 0.291832
Target:  5'- -cACGCGCAGCACGgccaaGGGCCAcaUGAUg- -3'
miRNA:   3'- guUGCGCGUCGUGU-----UUCGGU--ACUGau -5'
28177 5' -51.8 NC_005887.1 + 18991 0.72 0.417173
Target:  5'- gCAugGCGCAGUcuaacCAAAggccgcGCCAUGACUGu -3'
miRNA:   3'- -GUugCGCGUCGu----GUUU------CGGUACUGAU- -5'
28177 5' -51.8 NC_005887.1 + 17481 0.66 0.787842
Target:  5'- aGACGCagauGCAGCugAcGGCCGUG-Ca- -3'
miRNA:   3'- gUUGCG----CGUCGugUuUCGGUACuGau -5'
28177 5' -51.8 NC_005887.1 + 4954 0.68 0.633502
Target:  5'- aGACGCGCAGCucaacucccugaaggACGAGGCCcccaAUGAa-- -3'
miRNA:   3'- gUUGCGCGUCG---------------UGUUUCGG----UACUgau -5'
28177 5' -51.8 NC_005887.1 + 11459 0.68 0.63703
Target:  5'- gCAACGCGCAGCucgcgaacaaucagGCAGAGCag-GuCUAc -3'
miRNA:   3'- -GUUGCGCGUCG--------------UGUUUCGguaCuGAU- -5'
28177 5' -51.8 NC_005887.1 + 25664 0.66 0.787842
Target:  5'- cCAGC-CGCAGCGCGucGCCAUcGuCg- -3'
miRNA:   3'- -GUUGcGCGUCGUGUuuCGGUA-CuGau -5'
28177 5' -51.8 NC_005887.1 + 6878 0.66 0.787842
Target:  5'- cCAACGCGCAgGCGCugaucAAGUaCAUGAUc- -3'
miRNA:   3'- -GUUGCGCGU-CGUGu----UUCG-GUACUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.