miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2818 3' -54.2 NC_001491.2 + 122742 0.66 0.967211
Target:  5'- cCCcCAcCCCACCcuUCCCauaGCUcUCCCu -3'
miRNA:   3'- -GGaGU-GGGUGGuuAGGGa--UGGuAGGG- -5'
2818 3' -54.2 NC_001491.2 + 138457 0.66 0.967211
Target:  5'- gCUCGUCCGCgGGUUCCUcCUcgCCCu -3'
miRNA:   3'- gGAGUGGGUGgUUAGGGAuGGuaGGG- -5'
2818 3' -54.2 NC_001491.2 + 141738 0.66 0.967211
Target:  5'- gCCg--UCCACCAGccCCCUcaucCCGUCCCu -3'
miRNA:   3'- -GGaguGGGUGGUUa-GGGAu---GGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 107371 0.66 0.967211
Target:  5'- gCUCACCUACgGAcaCCCUucGCCccuGUCUCg -3'
miRNA:   3'- gGAGUGGGUGgUUa-GGGA--UGG---UAGGG- -5'
2818 3' -54.2 NC_001491.2 + 54868 0.66 0.963982
Target:  5'- gCCUCacacgaugACCCAuCCAGguuugCUgaGCUAUCCCg -3'
miRNA:   3'- -GGAG--------UGGGU-GGUUa----GGgaUGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 147783 0.66 0.963982
Target:  5'- gCCgcuGgCCGCCAGcUCCCcgaagcgcgcGCCGUCCCg -3'
miRNA:   3'- -GGag-UgGGUGGUU-AGGGa---------UGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 116542 0.66 0.963982
Target:  5'- cCCUCuCCCGCCug-CCCUcCCGaggcgcugugcUCCa -3'
miRNA:   3'- -GGAGuGGGUGGuuaGGGAuGGU-----------AGGg -5'
2818 3' -54.2 NC_001491.2 + 33733 0.66 0.963982
Target:  5'- aUCUgGUCCACCGccuccauuUCCCUGuCCGUCCa -3'
miRNA:   3'- -GGAgUGGGUGGUu-------AGGGAU-GGUAGGg -5'
2818 3' -54.2 NC_001491.2 + 30036 0.66 0.963982
Target:  5'- aCCUCGCCagCAUCAAccUCCCcaaaugccucGCCAUaCCCc -3'
miRNA:   3'- -GGAGUGG--GUGGUU--AGGGa---------UGGUA-GGG- -5'
2818 3' -54.2 NC_001491.2 + 49656 0.66 0.960537
Target:  5'- cCCcCAUCCGCCGG--CCUGCCcgCuCCa -3'
miRNA:   3'- -GGaGUGGGUGGUUagGGAUGGuaG-GG- -5'
2818 3' -54.2 NC_001491.2 + 56487 0.66 0.95687
Target:  5'- aCCgcuagaggCGCUguuuuUCGAUCCgCUGCCAUCCCc -3'
miRNA:   3'- -GGa-------GUGGgu---GGUUAGG-GAUGGUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 128525 0.66 0.948856
Target:  5'- aCCgCACCCACCAacagggucugggGUCCUgugGCCugcCUCa -3'
miRNA:   3'- -GGaGUGGGUGGU------------UAGGGa--UGGua-GGG- -5'
2818 3' -54.2 NC_001491.2 + 125530 0.67 0.944502
Target:  5'- cCCgCGCCCGCuCGGUCCacgGCCG-CCg -3'
miRNA:   3'- -GGaGUGGGUG-GUUAGGga-UGGUaGGg -5'
2818 3' -54.2 NC_001491.2 + 115512 0.67 0.944502
Target:  5'- gCUCACCUucgauccCCAggCCCUggccACCAUCgCg -3'
miRNA:   3'- gGAGUGGGu------GGUuaGGGA----UGGUAGgG- -5'
2818 3' -54.2 NC_001491.2 + 116853 0.67 0.944502
Target:  5'- aCUCACUCGCCGccguggCCggCUACCcggCCCa -3'
miRNA:   3'- gGAGUGGGUGGUua----GG--GAUGGua-GGG- -5'
2818 3' -54.2 NC_001491.2 + 111492 0.67 0.939911
Target:  5'- cCCUUugUCACgGAUCUC-AUCGUCCa -3'
miRNA:   3'- -GGAGugGGUGgUUAGGGaUGGUAGGg -5'
2818 3' -54.2 NC_001491.2 + 118370 0.67 0.928449
Target:  5'- cCCUCGgCCGCCGgcagcggcgGUCCuccuaccccggcggCUGCCG-CCCa -3'
miRNA:   3'- -GGAGUgGGUGGU---------UAGG--------------GAUGGUaGGG- -5'
2818 3' -54.2 NC_001491.2 + 116189 0.67 0.924709
Target:  5'- uCCUCGCCCGgCGGcgagCCCUucuCCGgcUCCg -3'
miRNA:   3'- -GGAGUGGGUgGUUa---GGGAu--GGU--AGGg -5'
2818 3' -54.2 NC_001491.2 + 125163 0.67 0.924709
Target:  5'- gCUCGCUCGCCGccgcaAUgCCaACCcgCCCc -3'
miRNA:   3'- gGAGUGGGUGGU-----UAgGGaUGGuaGGG- -5'
2818 3' -54.2 NC_001491.2 + 121285 0.68 0.913375
Target:  5'- aCC-CACCCAUCAAUUaguggGCCcUCCCc -3'
miRNA:   3'- -GGaGUGGGUGGUUAGgga--UGGuAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.