miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2818 5' -54.9 NC_001491.2 + 108643 0.66 0.951514
Target:  5'- uGGGGAccGGGAGAGCCcaaGCguauuuuaGAGGCCa -3'
miRNA:   3'- gCCUCUcuCUCUUUUGGc--CG--------CUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 145455 0.66 0.946017
Target:  5'- cCGGAGGGAG-GAGgccuccucccgggcGGCUGggaGCGGGcGCCg -3'
miRNA:   3'- -GCCUCUCUCuCUU--------------UUGGC---CGCUC-CGG- -5'
2818 5' -54.9 NC_001491.2 + 112816 0.66 0.942894
Target:  5'- uGGGGAGGGGGAAAAUgGGgGAa--- -3'
miRNA:   3'- gCCUCUCUCUCUUUUGgCCgCUccgg -5'
2818 5' -54.9 NC_001491.2 + 94148 0.66 0.942438
Target:  5'- uCGGAGAuaugcccGGGGGAAAgagugcACCG-CGGuGGCCg -3'
miRNA:   3'- -GCCUCU-------CUCUCUUU------UGGCcGCU-CCGG- -5'
2818 5' -54.9 NC_001491.2 + 147004 0.66 0.938232
Target:  5'- -uGAGGGcugcuGGGAccGAGUCGGUGGGGCCa -3'
miRNA:   3'- gcCUCUCu----CUCU--UUUGGCCGCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 148136 0.66 0.933334
Target:  5'- gCGGAGcccaggcgcaGGcAGAGGuacucgacgcAGCCGGUGAaGGCCa -3'
miRNA:   3'- -GCCUC----------UC-UCUCUu---------UUGGCCGCU-CCGG- -5'
2818 5' -54.9 NC_001491.2 + 116260 0.66 0.933334
Target:  5'- uGGucGGGGGGAuguUgGGgGAGGCCg -3'
miRNA:   3'- gCCucUCUCUCUuuuGgCCgCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 5763 0.66 0.933334
Target:  5'- --aAGAGcGAGc-GGCCGGCGuuuGGCCa -3'
miRNA:   3'- gccUCUCuCUCuuUUGGCCGCu--CCGG- -5'
2818 5' -54.9 NC_001491.2 + 117878 0.66 0.933334
Target:  5'- cCGGAG-GGGAucgc-CCGGCcgcuGGGGCCg -3'
miRNA:   3'- -GCCUCuCUCUcuuuuGGCCG----CUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 66493 0.67 0.928198
Target:  5'- aCGGAGAGAGgcuggcauAGAGGggcacacguACCuGC-AGGCCa -3'
miRNA:   3'- -GCCUCUCUC--------UCUUU---------UGGcCGcUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 147938 0.67 0.922823
Target:  5'- uCGGAccaGAGGGGcucgcgccGAGAGCCGcCGGGGCg -3'
miRNA:   3'- -GCCU---CUCUCU--------CUUUUGGCcGCUCCGg -5'
2818 5' -54.9 NC_001491.2 + 47933 0.67 0.922823
Target:  5'- -cGAGGGGGAGGccuAGACC--UGAGGCCc -3'
miRNA:   3'- gcCUCUCUCUCU---UUUGGccGCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 18973 0.67 0.921719
Target:  5'- cCGGAGGGcGAGAcucgcgaGGGCCGuGUGugauaacGGGCCc -3'
miRNA:   3'- -GCCUCUCuCUCU-------UUUGGC-CGC-------UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 148958 0.67 0.917209
Target:  5'- gCGGAGGGccuGGGccacGCCGGgGcucGGGCCg -3'
miRNA:   3'- -GCCUCUCu--CUCuuu-UGGCCgC---UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 68156 0.67 0.905271
Target:  5'- cCGGAGgAGGGGGAAGAUacgaacggGGCGcgcuaaacGGCCa -3'
miRNA:   3'- -GCCUC-UCUCUCUUUUGg-------CCGCu-------CCGG- -5'
2818 5' -54.9 NC_001491.2 + 123534 0.67 0.905271
Target:  5'- uGGAGAGGGAGcuugcGGCCG-CGGGcGCg -3'
miRNA:   3'- gCCUCUCUCUCuu---UUGGCcGCUC-CGg -5'
2818 5' -54.9 NC_001491.2 + 27593 0.67 0.902771
Target:  5'- uGGGGGGAGccauucucacuAAAgCGcGCGGGGCCg -3'
miRNA:   3'- gCCUCUCUCucu--------UUUgGC-CGCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 20150 0.67 0.898951
Target:  5'- uGGAGAauuggcGGGuGGAuuacAACCGGCGGGGg- -3'
miRNA:   3'- gCCUCU------CUCuCUU----UUGGCCGCUCCgg -5'
2818 5' -54.9 NC_001491.2 + 137099 0.67 0.898951
Target:  5'- cCGGuGAuGGGGGAGACgGGCacccuGAGGCa -3'
miRNA:   3'- -GCCuCUcUCUCUUUUGgCCG-----CUCCGg -5'
2818 5' -54.9 NC_001491.2 + 146730 0.68 0.892399
Target:  5'- uCGuAGAGGGAGAGGGCCGccgucuccaGCccGGCCg -3'
miRNA:   3'- -GCcUCUCUCUCUUUUGGC---------CGcuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.