miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28180 5' -58.6 NC_005887.1 + 34842 0.66 0.520141
Target:  5'- aCGC-UCGGGGuCGugcCGCCGagGGUGUa -3'
miRNA:   3'- -GCGcAGCUCC-GCua-GCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 8325 0.66 0.520141
Target:  5'- aCGCGcuguuucgCGAGGCauucGcgUGCCGUcUGGCGg -3'
miRNA:   3'- -GCGCa-------GCUCCG----CuaGCGGCA-ACCGCg -5'
28180 5' -58.6 NC_005887.1 + 4887 0.66 0.509809
Target:  5'- uCGCGaCGA--UGGUCGCCGagggccGGCGCg -3'
miRNA:   3'- -GCGCaGCUccGCUAGCGGCaa----CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 17528 0.66 0.509809
Target:  5'- aCGC-UCGAgGGCGGcaugaCGUCGgucGGCGCg -3'
miRNA:   3'- -GCGcAGCU-CCGCUa----GCGGCaa-CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 33514 0.66 0.50878
Target:  5'- cCGCG-CGAucuugucGGCGAUCaCCGUgaGCGCc -3'
miRNA:   3'- -GCGCaGCU-------CCGCUAGcGGCAacCGCG- -5'
28180 5' -58.6 NC_005887.1 + 6502 0.66 0.499563
Target:  5'- aGCGcaaucCGcAGGCGAUgaucuaCGCCGacgcGGCGCa -3'
miRNA:   3'- gCGCa----GC-UCCGCUA------GCGGCaa--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 8449 0.66 0.499563
Target:  5'- cCGCGUCaacGCGAUCGagCGcccGGCGCa -3'
miRNA:   3'- -GCGCAGcucCGCUAGCg-GCaa-CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 40673 0.66 0.499563
Target:  5'- uCGUGcUCGGGGCGAUCGa-----GCGCg -3'
miRNA:   3'- -GCGC-AGCUCCGCUAGCggcaacCGCG- -5'
28180 5' -58.6 NC_005887.1 + 27527 0.66 0.489411
Target:  5'- aCGCGgCG-GGCGGUCaUgGgcGGCGCu -3'
miRNA:   3'- -GCGCaGCuCCGCUAGcGgCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 8593 0.66 0.489411
Target:  5'- uCGU-UCGAcgcuGGCGAgcucUCGCCGUUgcucGGUGCa -3'
miRNA:   3'- -GCGcAGCU----CCGCU----AGCGGCAA----CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 41261 0.66 0.489411
Target:  5'- gGCGUCGGcaauGGCGccGUCGaCCugcgcacgGGCGCg -3'
miRNA:   3'- gCGCAGCU----CCGC--UAGC-GGcaa-----CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 21031 0.66 0.486383
Target:  5'- aCGUccgGUC-AGGCGAucgucucgacagguUCGUCGUcGGCGCc -3'
miRNA:   3'- -GCG---CAGcUCCGCU--------------AGCGGCAaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 8100 0.66 0.479356
Target:  5'- gCGCGcagcUCGccGCGcUCGCCGa-GGCGCc -3'
miRNA:   3'- -GCGC----AGCucCGCuAGCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 42013 0.66 0.479356
Target:  5'- -aCGUCGA-GUG-UCGCCGc-GGCGCg -3'
miRNA:   3'- gcGCAGCUcCGCuAGCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 39409 0.66 0.479356
Target:  5'- --gGUCGcGGCGGU-GCCGc-GGCGCu -3'
miRNA:   3'- gcgCAGCuCCGCUAgCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 33877 0.66 0.479356
Target:  5'- aCGUGUCGucgccGaGCGGUugCGCCG--GGCGCu -3'
miRNA:   3'- -GCGCAGCu----C-CGCUA--GCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 1597 0.66 0.469403
Target:  5'- gCGCGgcgCGccaacGGCGAUCGCCucgacgcgGGCGg -3'
miRNA:   3'- -GCGCa--GCu----CCGCUAGCGGcaa-----CCGCg -5'
28180 5' -58.6 NC_005887.1 + 28041 0.66 0.469403
Target:  5'- uGCGUCGGcGUGAUCGa-GcaGGCGCu -3'
miRNA:   3'- gCGCAGCUcCGCUAGCggCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 31020 0.66 0.469403
Target:  5'- aGCGUaccGGCcGUCGCgGUUgcGGCGCu -3'
miRNA:   3'- gCGCAgcuCCGcUAGCGgCAA--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 37551 0.66 0.469403
Target:  5'- uGCG-CGAGauccGCGAgcacggccUCGCCGgcUGGCGUc -3'
miRNA:   3'- gCGCaGCUC----CGCU--------AGCGGCa-ACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.