miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2819 3' -52.9 NC_001491.2 + 37368 0.66 0.980866
Target:  5'- cUCUCGGuGGGACCGCacGUaacaaaaaauACAaGCGCGCc -3'
miRNA:   3'- -AGAGCU-UUUUGGCG--CG----------UGUgCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 84838 0.66 0.980866
Target:  5'- gUC-CGcuGGAACUGUcgGCACAaGCGCGCu -3'
miRNA:   3'- -AGaGCu-UUUUGGCG--CGUGUgCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 146844 0.66 0.980866
Target:  5'- gUC-CGGgccaccaccAGAACgGCGCGCAcCGCgagGCGCa -3'
miRNA:   3'- -AGaGCU---------UUUUGgCGCGUGU-GCG---CGCG- -5'
2819 3' -52.9 NC_001491.2 + 123536 0.66 0.980866
Target:  5'- gCUgGAGAGggagcuugcgGCCGCGgGCGCGCagguaCGCc -3'
miRNA:   3'- aGAgCUUUU----------UGGCGCgUGUGCGc----GCG- -5'
2819 3' -52.9 NC_001491.2 + 114951 0.66 0.980652
Target:  5'- -gUCGccugcGCCGUGCGCugGCcccgggaGCGCc -3'
miRNA:   3'- agAGCuuuu-UGGCGCGUGugCG-------CGCG- -5'
2819 3' -52.9 NC_001491.2 + 22849 0.66 0.978639
Target:  5'- aCUcCGAAucuAACUacCGCACACG-GCGCg -3'
miRNA:   3'- aGA-GCUUu--UUGGc-GCGUGUGCgCGCG- -5'
2819 3' -52.9 NC_001491.2 + 60900 0.66 0.976225
Target:  5'- uUCUCuuc--GCUGUucGCGCACGCaGCGCc -3'
miRNA:   3'- -AGAGcuuuuUGGCG--CGUGUGCG-CGCG- -5'
2819 3' -52.9 NC_001491.2 + 119640 0.66 0.976225
Target:  5'- --gCGAucacGAACCcCGUugGCGCGaCGCg -3'
miRNA:   3'- agaGCUu---UUUGGcGCGugUGCGC-GCG- -5'
2819 3' -52.9 NC_001491.2 + 144599 0.66 0.976225
Target:  5'- --gCGAAGucGCUGCGCugGCuggccaugGCGUGCu -3'
miRNA:   3'- agaGCUUUu-UGGCGCGugUG--------CGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 124924 0.66 0.973617
Target:  5'- --gCGAGGuGCCGUGC-CGCGUGC-Cg -3'
miRNA:   3'- agaGCUUUuUGGCGCGuGUGCGCGcG- -5'
2819 3' -52.9 NC_001491.2 + 35516 0.66 0.973617
Target:  5'- --aCGGAGggUCGUucggGCACugGCauGCGCg -3'
miRNA:   3'- agaGCUUUuuGGCG----CGUGugCG--CGCG- -5'
2819 3' -52.9 NC_001491.2 + 125521 0.66 0.973617
Target:  5'- gCUCGGuccacGGCCGC-CGC-CGCGaCGCc -3'
miRNA:   3'- aGAGCUuu---UUGGCGcGUGuGCGC-GCG- -5'
2819 3' -52.9 NC_001491.2 + 95220 0.66 0.973617
Target:  5'- --aCGuGAAcGCUGCGCuCGcCGCGCGCc -3'
miRNA:   3'- agaGC-UUUuUGGCGCGuGU-GCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 38224 0.66 0.973617
Target:  5'- --gCGAGu--CCGUGCGgGucCGCGCGCc -3'
miRNA:   3'- agaGCUUuuuGGCGCGUgU--GCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 40214 0.66 0.970808
Target:  5'- cCUCGGAAGACaCGUGU-UugGCG-GCg -3'
miRNA:   3'- aGAGCUUUUUG-GCGCGuGugCGCgCG- -5'
2819 3' -52.9 NC_001491.2 + 65775 0.66 0.970808
Target:  5'- --cCGGAGAgcgcucACCGCGCcCAgGCgaGCGCa -3'
miRNA:   3'- agaGCUUUU------UGGCGCGuGUgCG--CGCG- -5'
2819 3' -52.9 NC_001491.2 + 82751 0.67 0.96779
Target:  5'- --aCcAGAGACCGCGC-CACGC-CGUu -3'
miRNA:   3'- agaGcUUUUUGGCGCGuGUGCGcGCG- -5'
2819 3' -52.9 NC_001491.2 + 28386 0.67 0.964558
Target:  5'- aUUUGAucAGCCGCGacgaggcgaucCACACuCGCGCc -3'
miRNA:   3'- aGAGCUuuUUGGCGC-----------GUGUGcGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 90267 0.67 0.964558
Target:  5'- --cCGAu--GCCGaggcuaGCuuGCGCGCGCa -3'
miRNA:   3'- agaGCUuuuUGGCg-----CGugUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 86164 0.67 0.964558
Target:  5'- gCUCGggGGcgcGCUGCGC-CACGCugaugaugcaGuCGCg -3'
miRNA:   3'- aGAGCuuUU---UGGCGCGuGUGCG----------C-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.