miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28207 3' -52.9 NC_005891.1 + 14587 0.69 0.597876
Target:  5'- uGGUGUUGAgGUCGACcgcaccauugacGCCCUAg--- -3'
miRNA:   3'- cCCACAGCUgCAGCUG------------UGGGAUgaau -5'
28207 3' -52.9 NC_005891.1 + 22549 0.68 0.620577
Target:  5'- gGGGUuccCGACGUgGACGCCUU-CUUGg -3'
miRNA:   3'- -CCCAca-GCUGCAgCUGUGGGAuGAAU- -5'
28207 3' -52.9 NC_005891.1 + 34163 0.68 0.643321
Target:  5'- uGGGUGUUGuAUGUCGAaaCACCCcaaggGCa-- -3'
miRNA:   3'- -CCCACAGC-UGCAGCU--GUGGGa----UGaau -5'
28207 3' -52.9 NC_005891.1 + 9012 0.68 0.677325
Target:  5'- -uGUGUCGAUGUCGACAUaCUuccGCUUu -3'
miRNA:   3'- ccCACAGCUGCAGCUGUGgGA---UGAAu -5'
28207 3' -52.9 NC_005891.1 + 20205 0.66 0.743762
Target:  5'- cGGGUGaCGACGgucUGcCACCUUACa-- -3'
miRNA:   3'- -CCCACaGCUGCa--GCuGUGGGAUGaau -5'
28207 3' -52.9 NC_005891.1 + 10513 0.66 0.775524
Target:  5'- cGGUGUCGGCGUCuccuuuGgAgCCUGCUc- -3'
miRNA:   3'- cCCACAGCUGCAGc-----UgUgGGAUGAau -5'
28207 3' -52.9 NC_005891.1 + 29606 0.66 0.775524
Target:  5'- uGGGUGUUGAgGcguuUCGACACUUUgauuugcgACUUAg -3'
miRNA:   3'- -CCCACAGCUgC----AGCUGUGGGA--------UGAAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.