miRNA display CGI

Results 21 - 27 of 27 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28207	3'	-52.9	NC_005891.1	+	14587	0.69	0.597876
	Target:  5'- uGGUGUUGAgGUCGACcgcaccauugacGCCCUAg--- -3' miRNA:   3'- cCCACAGCUgCAGCUG------------UGGGAUgaau -5'
28207	3'	-52.9	NC_005891.1	+	22549	0.68	0.620577
	Target:  5'- gGGGUuccCGACGUgGACGCCUU-CUUGg -3' miRNA:   3'- -CCCAca-GCUGCAgCUGUGGGAuGAAU- -5'
28207	3'	-52.9	NC_005891.1	+	34163	0.68	0.643321
	Target:  5'- uGGGUGUUGuAUGUCGAaaCACCCcaaggGCa-- -3' miRNA:   3'- -CCCACAGC-UGCAGCU--GUGGGa----UGaau -5'
28207	3'	-52.9	NC_005891.1	+	9012	0.68	0.677325
	Target:  5'- -uGUGUCGAUGUCGACAUaCUuccGCUUu -3' miRNA:   3'- ccCACAGCUGCAGCUGUGgGA---UGAAu -5'
28207	3'	-52.9	NC_005891.1	+	20205	0.66	0.743762
	Target:  5'- cGGGUGaCGACGgucUGcCACCUUACa-- -3' miRNA:   3'- -CCCACaGCUGCa--GCuGUGGGAUGaau -5'
28207	3'	-52.9	NC_005891.1	+	29606	0.66	0.775524
	Target:  5'- uGGGUGUUGAgGcguuUCGACACUUUgauuugcgACUUAg -3' miRNA:   3'- -CCCACAGCUgC----AGCUGUGGGA--------UGAAU- -5'
28207	3'	-52.9	NC_005891.1	+	10513	0.66	0.775524
	Target:  5'- cGGUGUCGGCGUCuccuuuGgAgCCUGCUc- -3' miRNA:   3'- cCCACAGCUGCAGc-----UgUgGGAUGAau -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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