Results 1 - 20 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28250 | 3' | -44.6 | NC_005902.1 | + | 85615 | 0.66 | 0.999999 |
Target: 5'- -cAUCCUUUAACcCUUAAGCUaUAUAc -3' miRNA: 3'- auUGGGAAAUUGuGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 48161 | 0.66 | 0.999999 |
Target: 5'- uUAACCCUUUAACuCCUAAaguauuaucaaugauGCUuUGUAu -3' miRNA: 3'- -AUUGGGAAAUUGuGGAUU---------------CGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 163444 | 0.66 | 0.999999 |
Target: 5'- uUAACCCUUUAAauCCUAAGgCUaUAUAa -3' miRNA: 3'- -AUUGGGAAAUUguGGAUUC-GAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 92156 | 0.66 | 0.999998 |
Target: 5'- uUAAUCUUUUAACAaCUAAGCUaUAUAc -3' miRNA: 3'- -AUUGGGAAAUUGUgGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 43522 | 0.66 | 0.999998 |
Target: 5'- uUAACCUUUUAACAUCUAAcCUaUAUAc -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 28968 | 0.66 | 0.999998 |
Target: 5'- aUAGCUUaggugUUAACACCUAAGCUa---- -3' miRNA: 3'- -AUUGGGa----AAUUGUGGAUUCGAcauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 113601 | 0.66 | 0.999998 |
Target: 5'- -uAUCCUUUAAUAUCUAAGCa----- -3' miRNA: 3'- auUGGGAAAUUGUGGAUUCGacauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 157070 | 0.66 | 0.999998 |
Target: 5'- aUAGCUUaggugUUAACACCUAAGCUa---- -3' miRNA: 3'- -AUUGGGa----AAUUGUGGAUUCGAcauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 73847 | 0.66 | 0.999998 |
Target: 5'- uUAACCUUUUAACACaUAAGCa----- -3' miRNA: 3'- -AUUGGGAAAUUGUGgAUUCGacauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 175513 | 0.66 | 0.999998 |
Target: 5'- uUAACCCUUUAACuCUUAAGaUGUu-- -3' miRNA: 3'- -AUUGGGAAAUUGuGGAUUCgACAuau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 28927 | 0.66 | 0.999997 |
Target: 5'- -uACCCUUUAAauCCUAAGCU-UAUAc -3' miRNA: 3'- auUGGGAAAUUguGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 148615 | 0.66 | 0.999997 |
Target: 5'- uUAACCCUUUAAUACCUAuaUUaUAUAc -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUucGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 34870 | 0.66 | 0.999997 |
Target: 5'- uUAACCCUUUAAUuCCUAAGgCUuUAa- -3' miRNA: 3'- -AUUGGGAAAUUGuGGAUUC-GAcAUau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 134638 | 0.66 | 0.999997 |
Target: 5'- uUAACCCUUUAAUuCCUAAuguGUUGUu-- -3' miRNA: 3'- -AUUGGGAAAUUGuGGAUU---CGACAuau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 74604 | 0.66 | 0.999997 |
Target: 5'- -uACCCUUUAAUAUaUAAGCUaUAUAu -3' miRNA: 3'- auUGGGAAAUUGUGgAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 28789 | 0.66 | 0.999996 |
Target: 5'- -uAUCCUUUAACAUCUGuGCucuuuUGUAUAu -3' miRNA: 3'- auUGGGAAAUUGUGGAUuCG-----ACAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 84813 | 0.66 | 0.999996 |
Target: 5'- uUAACCCUUUAAC-UCUuAGCUaUAUGu -3' miRNA: 3'- -AUUGGGAAAUUGuGGAuUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 140918 | 0.66 | 0.999996 |
Target: 5'- uUAAUCa--UAACACCUAAGCUaUAUAc -3' miRNA: 3'- -AUUGGgaaAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 100152 | 0.66 | 0.999996 |
Target: 5'- uUAACCUUUUuAUGCCUAAGUUaUAUAc -3' miRNA: 3'- -AUUGGGAAAuUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 151173 | 0.67 | 0.999994 |
Target: 5'- aAGCCUUaggaauuaaagggUUAACACCUAAGUUaUAUAu -3' miRNA: 3'- aUUGGGA-------------AAUUGUGGAUUCGAcAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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