miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 48161 0.66 0.999999
Target:  5'- uUAACCCUUUAACuCCUAAaguauuaucaaugauGCUuUGUAu -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU---------------CGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 85615 0.66 0.999999
Target:  5'- -cAUCCUUUAACcCUUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGuGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 163444 0.66 0.999999
Target:  5'- uUAACCCUUUAAauCCUAAGgCUaUAUAa -3'
miRNA:   3'- -AUUGGGAAAUUguGGAUUC-GAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 113601 0.66 0.999998
Target:  5'- -uAUCCUUUAAUAUCUAAGCa----- -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGacauau -5'
28250 3' -44.6 NC_005902.1 + 28968 0.66 0.999998
Target:  5'- aUAGCUUaggugUUAACACCUAAGCUa---- -3'
miRNA:   3'- -AUUGGGa----AAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 43522 0.66 0.999998
Target:  5'- uUAACCUUUUAACAUCUAAcCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 92156 0.66 0.999998
Target:  5'- uUAAUCUUUUAACAaCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUgGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 73847 0.66 0.999998
Target:  5'- uUAACCUUUUAACACaUAAGCa----- -3'
miRNA:   3'- -AUUGGGAAAUUGUGgAUUCGacauau -5'
28250 3' -44.6 NC_005902.1 + 157070 0.66 0.999998
Target:  5'- aUAGCUUaggugUUAACACCUAAGCUa---- -3'
miRNA:   3'- -AUUGGGa----AAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 175513 0.66 0.999998
Target:  5'- uUAACCCUUUAACuCUUAAGaUGUu-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCgACAuau -5'
28250 3' -44.6 NC_005902.1 + 148615 0.66 0.999997
Target:  5'- uUAACCCUUUAAUACCUAuaUUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUucGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 134638 0.66 0.999997
Target:  5'- uUAACCCUUUAAUuCCUAAuguGUUGUu-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU---CGACAuau -5'
28250 3' -44.6 NC_005902.1 + 74604 0.66 0.999997
Target:  5'- -uACCCUUUAAUAUaUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGgAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 34870 0.66 0.999997
Target:  5'- uUAACCCUUUAAUuCCUAAGgCUuUAa- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUC-GAcAUau -5'
28250 3' -44.6 NC_005902.1 + 28927 0.66 0.999997
Target:  5'- -uACCCUUUAAauCCUAAGCU-UAUAc -3'
miRNA:   3'- auUGGGAAAUUguGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 84813 0.66 0.999996
Target:  5'- uUAACCCUUUAAC-UCUuAGCUaUAUGu -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAuUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 140918 0.66 0.999996
Target:  5'- uUAAUCa--UAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGgaaAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 28789 0.66 0.999996
Target:  5'- -uAUCCUUUAACAUCUGuGCucuuuUGUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUuCG-----ACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 100152 0.66 0.999996
Target:  5'- uUAACCUUUUuAUGCCUAAGUUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAuUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 43915 0.67 0.999994
Target:  5'- -uACUCUUUAACACCUaAAGCa----- -3'
miRNA:   3'- auUGGGAAAUUGUGGA-UUCGacauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.