miRNA display CGI


Results 41 - 60 of 300 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 148615 0.66 0.999997
Target:  5'- uUAACCCUUUAAUACCUAuaUUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUucGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 134638 0.66 0.999997
Target:  5'- uUAACCCUUUAAUuCCUAAuguGUUGUu-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU---CGACAuau -5'
28250 3' -44.6 NC_005902.1 + 73847 0.66 0.999998
Target:  5'- uUAACCUUUUAACACaUAAGCa----- -3'
miRNA:   3'- -AUUGGGAAAUUGUGgAUUCGacauau -5'
28250 3' -44.6 NC_005902.1 + 157070 0.66 0.999998
Target:  5'- aUAGCUUaggugUUAACACCUAAGCUa---- -3'
miRNA:   3'- -AUUGGGa----AAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 175513 0.66 0.999998
Target:  5'- uUAACCCUUUAACuCUUAAGaUGUu-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCgACAuau -5'
28250 3' -44.6 NC_005902.1 + 55127 0.67 0.999991
Target:  5'- -uACCCUUUAAauCCUAAGCUauaaacaauuGUGUAu -3'
miRNA:   3'- auUGGGAAAUUguGGAUUCGA----------CAUAU- -5'
28250 3' -44.6 NC_005902.1 + 116878 0.67 0.999991
Target:  5'- uUAACCCUUUAAUuCCUAAGaCUa---- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUC-GAcauau -5'
28250 3' -44.6 NC_005902.1 + 48402 0.69 0.999857
Target:  5'- gAACCCUUUAACuCCUaAAGUaucauugaUGUAUGa -3'
miRNA:   3'- aUUGGGAAAUUGuGGA-UUCG--------ACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 179694 0.69 0.999857
Target:  5'- -uAUCCUUUAAaACCUAAGCUaUAUAu -3'
miRNA:   3'- auUGGGAAAUUgUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 31086 0.69 0.999891
Target:  5'- -cACCUUUUAACACCcAAGCUa---- -3'
miRNA:   3'- auUGGGAAAUUGUGGaUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 177586 0.68 0.999918
Target:  5'- uUAACCUUUUAACACCUAAaCUa---- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcauau -5'
28250 3' -44.6 NC_005902.1 + 144981 0.68 0.999918
Target:  5'- uUAAUCCUUUAAUACUaAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGaUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 157172 0.68 0.999955
Target:  5'- -uGCCCUaggaaUUAAUACCUAAGUUaUAUAc -3'
miRNA:   3'- auUGGGA-----AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 127776 0.68 0.999967
Target:  5'- -uACCUUUUAACACUgAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGaUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 89958 0.67 0.999976
Target:  5'- uUAACCCUUUAACuCCUAAgGCa----- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU-CGacauau -5'
28250 3' -44.6 NC_005902.1 + 143641 0.67 0.999976
Target:  5'- -uACCUUUUAACAUCUAAGU--UAUAa -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGacAUAU- -5'
28250 3' -44.6 NC_005902.1 + 95403 0.67 0.999976
Target:  5'- uUAAUCCUUUAACACCUAAaUUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 127469 0.67 0.999983
Target:  5'- -uACUCUUUAACACaUAAGCUaUAUAg -3'
miRNA:   3'- auUGGGAAAUUGUGgAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 102202 0.67 0.999988
Target:  5'- uUAACCCUUUAACuCCUAAGa------ -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCgacauau -5'
28250 3' -44.6 NC_005902.1 + 13395 0.67 0.999988
Target:  5'- uUAACCU---AAUACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGaaaUUGUGGAUUCGAcAUAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.