miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 184894 1.09 0.037077
Target:  5'- uUGUAUACAGCUUAGGUCUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 184631 0.7 0.999289
Target:  5'- cGUAUAUAGCUUAGGggUUAAAaaGGUg -3'
miRNA:   3'- aCAUAUGUCGAAUCCagAAUUUc-CCA- -5'
28250 5' -45.3 NC_005902.1 + 182607 0.67 0.999984
Target:  5'- -aUAUAaGGCUUAGuUUUUAAAGGGUu -3'
miRNA:   3'- acAUAUgUCGAAUCcAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 180393 0.73 0.993624
Target:  5'- aGUAUAUAGCUUAauUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 179726 0.89 0.401899
Target:  5'- uUGUAUAUGGCUUAGGUCUuaaagauUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAGA-------AUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 178441 0.77 0.947338
Target:  5'- aGUAUAUAaUUUAGGUgUUAAAGGGUg -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 175654 0.69 0.999718
Target:  5'- aGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 173498 0.71 0.99719
Target:  5'- uUGUAUAUAaUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 173217 0.67 0.999958
Target:  5'- -aUAUAUAaCUUAGGagUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUcGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 172858 0.94 0.239933
Target:  5'- gGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 170619 0.72 0.996656
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 169577 0.76 0.956113
Target:  5'- aGUGUAUAGUUUAGGUgUUAAAaGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 169167 0.76 0.963836
Target:  5'- --gAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- acaUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 168402 0.67 0.999958
Target:  5'- aGUAUA-AGcCUUAGGgUUUAAAGGGUu -3'
miRNA:   3'- aCAUAUgUC-GAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 167291 0.82 0.750732
Target:  5'- uUGUAUAUAaCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 167185 0.8 0.829087
Target:  5'- cGUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 165978 0.78 0.907965
Target:  5'- uUGUAUAUGGCUUAuGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 164874 0.71 0.997651
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGa -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 164731 0.67 0.999984
Target:  5'- aGUAUAUAGCUUAGaUgUUAAAaGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 162785 0.87 0.501514
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.