miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 178372 0.69 0.999897
Target:  5'- uACCUAAGCUAUAUA-CA-AGCAuAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUaUCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 86451 0.67 0.999983
Target:  5'- cACUUAAGCUAUAUacaaauaAGUGcAGCGAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 142161 0.68 0.999969
Target:  5'- uAUUUAAGCUAUAUAugaaCAUAGUAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUGUc---GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 13404 0.68 0.999969
Target:  5'- uACCUAAGCUAUAUaugugAGUAUAaCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-----UCGUAUcGUUUau -5'
28255 5' -44.4 NC_005902.1 + 148791 0.68 0.999967
Target:  5'- aGCUUAAGUguuaagauaaaguUAUACauaagcaAGCGUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCG-------------AUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 23296 0.68 0.999943
Target:  5'- uACCUAAGCUAUAUAuGaaugAGUGAAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU-Cgua-UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 54894 0.68 0.999923
Target:  5'- uACCUAAGCUAUAUAcaaaagaaCAUAGUGAAa- -3'
miRNA:   3'- -UGGAUUCGAUAUGUc-------GUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 151197 0.68 0.999923
Target:  5'- cACCUAAGUuaUAUAUAGaUGUAGUGAAUGa -3'
miRNA:   3'- -UGGAUUCG--AUAUGUC-GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 117012 0.68 0.999923
Target:  5'- uCCUAAGUcuUAUACaAGUgaacGUAGCAAAUAg -3'
miRNA:   3'- uGGAUUCG--AUAUG-UCG----UAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 157237 0.67 0.999984
Target:  5'- cACCUAAGCUAUAUA-CAaaagAGCAcaGAUGu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUa---UCGU--UUAU- -5'
28255 5' -44.4 NC_005902.1 + 145054 0.67 0.999984
Target:  5'- cACCUAAGCUAUAUgugAGUguauAUAGCuuAGGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCG----UAUCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 4782 0.67 0.999988
Target:  5'- cCCUAcGCUAUAUacaaauaAGCAUagugAGCAAGUAu -3'
miRNA:   3'- uGGAUuCGAUAUG-------UCGUA----UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 162543 0.66 0.999999
Target:  5'- cACUUAAGCUAUAUacaacugAGUAUguaAGUAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUA---UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 12184 0.66 0.999998
Target:  5'- uCCUAAGguUUAUAUaagugAGCAUAGCAAAc- -3'
miRNA:   3'- uGGAUUC--GAUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 90246 0.66 0.999997
Target:  5'- uACUUAAaUUAUAUaaacaAGCAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUcGAUAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 36323 0.66 0.999997
Target:  5'- uCCUAAgGCuUAUACaagugAGCAUAGUGAAUGa -3'
miRNA:   3'- uGGAUU-CG-AUAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 29282 0.67 0.999995
Target:  5'- aAUCUAAGCcaUAUACAaaCGUAGUAAGUAa -3'
miRNA:   3'- -UGGAUUCG--AUAUGUc-GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 90066 0.67 0.999992
Target:  5'- cACCUAAGUUAUAUacaAGUGUAaCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUAUcGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 23419 0.67 0.999992
Target:  5'- cACCcAAGCUAUAUacaaacaAGUAcAGCAAGUGa -3'
miRNA:   3'- -UGGaUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 142221 0.67 0.999989
Target:  5'- uCCUAAgGCUugcACgAGCAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CGAua-UG-UCGUAUCGUUUau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.