miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 100950 0.66 1
Target:  5'- cCCCUa-AACuCCUAAGCUAUuuaaaaugaGCAUGu -3'
miRNA:   3'- -GGGAaaUUGuGGAUUCGAUA---------UGUAUg -5'
28256 3' -42 NC_005902.1 + 40914 0.66 1
Target:  5'- aUCC-UUAAUACCUAAaGCUAUAaaguguUGCu -3'
miRNA:   3'- -GGGaAAUUGUGGAUU-CGAUAUgu----AUG- -5'
28256 3' -42 NC_005902.1 + 111390 0.67 1
Target:  5'- uCgCUUUAACaccACCUAAGUUAUAUAc-- -3'
miRNA:   3'- -GgGAAAUUG---UGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 162808 0.67 1
Target:  5'- ---gUUAAUAUCUAAGCU-UGCAUAUa -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAuAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 62673 0.67 1
Target:  5'- cCCCUUUAAaacUAUCUAaaaaAGCUGUAUuugACa -3'
miRNA:   3'- -GGGAAAUU---GUGGAU----UCGAUAUGua-UG- -5'
28256 3' -42 NC_005902.1 + 68959 0.67 1
Target:  5'- ---gUUAAUACUUAAGCUAUAUAa-- -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 98888 0.67 1
Target:  5'- ---aUUAACuCCUAAGUUAUAUAUAa -3'
miRNA:   3'- gggaAAUUGuGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 23414 0.67 1
Target:  5'- ---gUUAACACCcAAGCUAUAUacaaacaaGUACa -3'
miRNA:   3'- gggaAAUUGUGGaUUCGAUAUG--------UAUG- -5'
28256 3' -42 NC_005902.1 + 116672 0.67 1
Target:  5'- uUUUUUAACACCUGaAGCU-UAUAUAg -3'
miRNA:   3'- gGGAAAUUGUGGAU-UCGAuAUGUAUg -5'
28256 3' -42 NC_005902.1 + 137625 0.67 1
Target:  5'- aCCCUU---UACCUAAGUaUAUACAa-- -3'
miRNA:   3'- -GGGAAauuGUGGAUUCG-AUAUGUaug -5'
28256 3' -42 NC_005902.1 + 107242 0.67 1
Target:  5'- aCCCUUUAACuCUUAAGgUGUuaucaACAaUGCa -3'
miRNA:   3'- -GGGAAAUUGuGGAUUCgAUA-----UGU-AUG- -5'
28256 3' -42 NC_005902.1 + 43845 0.66 1
Target:  5'- uUCUUUAACuuUUAAGCUAUAUAc-- -3'
miRNA:   3'- gGGAAAUUGugGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 23348 0.66 1
Target:  5'- aCCCUUUAACcCCUuuAAGCgaugACAc-- -3'
miRNA:   3'- -GGGAAAUUGuGGA--UUCGaua-UGUaug -5'
28256 3' -42 NC_005902.1 + 145337 0.66 1
Target:  5'- aCUCUU---UAUCUAAGCUAUAUAcACa -3'
miRNA:   3'- -GGGAAauuGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 138758 0.66 1
Target:  5'- aCUUUUuuaaucucaacacaAACAUCUAAGCUAUAUAc-- -3'
miRNA:   3'- gGGAAA--------------UUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 95456 0.66 1
Target:  5'- aCCCUUUAAauCCUAAGgCUuAUACAa-- -3'
miRNA:   3'- -GGGAAAUUguGGAUUC-GA-UAUGUaug -5'
28256 3' -42 NC_005902.1 + 43916 0.66 1
Target:  5'- aCUCUUUAACACCUaAAGCa-------- -3'
miRNA:   3'- -GGGAAAUUGUGGA-UUCGauauguaug -5'
28256 3' -42 NC_005902.1 + 178411 0.66 1
Target:  5'- aCCUUUUAAUACUUAAaCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 67573 0.66 1
Target:  5'- aCCUuaaaauuuaaaaagUUAACAUCUAAGCUcauuUAUAUAg -3'
miRNA:   3'- gGGA--------------AAUUGUGGAUUCGAu---AUGUAUg -5'
28256 3' -42 NC_005902.1 + 177828 0.66 1
Target:  5'- ---aUUAACuuuGCCUAAGCUAUAUAc-- -3'
miRNA:   3'- gggaAAUUG---UGGAUUCGAUAUGUaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.